Genomic Location: HOLI00059:267568...268371
NR annotation: WP_105261162.1, class III extradiol ring-cleavage dioxygenase [Rhodoferax sp. TS-BS-61-7]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00059.g25778.t1 |
| Transcript |
| HOLI00059.g25778.t1 |
| Protein |
| HOLI00059.G25778 |
| UniProt accession | Description |
|---|---|
| Q70FG7 | 4,5-DOPA dioxygenase extradiol OS=Beta vulgaris OX=161934 GN=DODA PE=1 SV=1 |
| A0A0F7CUE8 | Dioxygenase tasH OS=Hapsidospora irregularis OX=95324 GN=tasH PE=1 SV=1 |
| Q949R4 | Extradiol ring-cleavage dioxygenase OS=Arabidopsis thaliana OX=3702 GN=LIGB PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02900 all species → | LigB | Catalytic LigB subunit of aromatic ring-opening dioxygenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004183 all species → | Domain | Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B | Interproscan |
| IPR014436 all species → | Family | Extradiol aromatic ring-opening dioxygenase, DODA-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30096 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006725 all species → | Biological Process | obsolete cellular aromatic compound metabolic process | Interproscan |
| GO:0008198 all species → | Molecular Function | ferrous iron binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0016701 all species → | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15777 | DODA; 4,5-DOPA dioxygenase extradiol | EC:1.13.11.- | Betalain biosynthesis | ko00965 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
