Genomic Location: HOLI00059:351709...352845
NR annotation: WP_105261106.1, glutamate 5-kinase [Rhodoferax sp. TS-BS-61-7]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00059.g25853.t1 |
| Transcript |
| HOLI00059.g25853.t1 |
| Protein |
| HOLI00059.G25853 |
| UniProt accession | Description |
|---|---|
| Q12FA0 | Glutamate 5-kinase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) OX=296591 GN=proB PE=3 SV=1 |
| Q21YZ8 | Glutamate 5-kinase OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=proB PE=3 SV=1 |
| A1VK89 | Glutamate 5-kinase OS=Polaromonas naphthalenivorans (strain CJ2) OX=365044 GN=proB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0066279 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00696 all species → | AA_kinase | Amino acid kinase family | Family | Interproscan |
| PF01472 all species → | PUA | PUA domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005715 all species → | Family | Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase | Interproscan |
| IPR011529 all species → | Family | Glutamate 5-kinase | Interproscan |
| IPR036974 all species → | Homologous_superfamily | PUA domain superfamily | Interproscan |
| IPR036393 all species → | Homologous_superfamily | Acetylglutamate kinase-like superfamily | Interproscan |
| IPR002478 all species → | Domain | PUA domain | Interproscan |
| IPR001057 all species → | Family | Glutamate/acetylglutamate kinase | Interproscan |
| IPR015947 all species → | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR001048 all species → | Domain | Aspartate/glutamate/uridylate kinase | Interproscan |
| IPR041739 all species → | Domain | Glutamate-5-kinase domain | Interproscan |
| IPR019797 all species → | Conserved_site | Glutamate 5-kinase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43654 all species → | GLUTAMATE 5-KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006561 all species → | Biological Process | proline biosynthetic process | Interproscan |
| GO:0004349 all species → | Molecular Function | glutamate 5-kinase activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016301 all species → | Molecular Function | kinase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00931 | proB; glutamate 5-kinase | EC:2.7.2.11 | Carbapenem biosynthesis | ko00332 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
