Genomic Location: HOLI00059:826552...828245
NR annotation: NDE41021.1, 3-oxoacyl-ACP reductase FabG [Betaproteobacteria bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00059.g26250.t1 |
| Transcript |
| HOLI00059.g26250.t1 |
| Protein |
| HOLI00059.G26250 |
| UniProt accession | Description |
|---|---|
| P0AAJ0 | Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=fabD PE=3 SV=2 |
| P0AAI9 | Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli (strain K12) OX=83333 GN=fabD PE=1 SV=2 |
| Q8X8I7 | Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli O157:H7 OX=83334 GN=fabD PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001931 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| PF13561 all species → | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR020904 all species → | Conserved_site | Short-chain dehydrogenase/reductase, conserved site | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR016036 all species → | Homologous_superfamily | Malonyl-CoA ACP transacylase, ACP-binding | Interproscan |
| IPR002347 all species → | Family | Short-chain dehydrogenase/reductase SDR | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| IPR050858 all species → | Family | Malonyl CoA-ACP Transacylase/Polyketide Synthase FabD | Interproscan |
| IPR004410 all species → | Family | Malonyl CoA-acyl carrier protein transacylase, FabD-type | Interproscan |
| IPR011284 all species → | Family | 3-oxoacyl-(acyl-carrier-protein) reductase | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42681 all species → | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0004314 all species → | Molecular Function | [acyl-carrier-protein] S-malonyltransferase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0004316 all species → | Molecular Function | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
HOLI00059.G26250.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
