Genomic Location: HOLI00059:1083684...1084793
NR annotation: PQA79495.1, phosphate regulon sensor histidine kinase PhoR [Rhodoferax sp. TS-BS-61-7]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00059.g26493.t1 |
| Transcript |
| HOLI00059.g26493.t1 |
| Protein |
| HOLI00059.G26493 |
| UniProt accession | Description |
|---|---|
| P23621 | Phosphate regulon sensor protein PhoR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=phoR PE=3 SV=2 |
| P08400 | Phosphate regulon sensor protein PhoR OS=Escherichia coli (strain K12) OX=83333 GN=phoR PE=1 SV=1 |
| P45609 | Phosphate regulon sensor protein PhoR OS=Shigella dysenteriae OX=622 GN=phoR PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007005 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00512 all species → | HisKA | His Kinase A (phospho-acceptor) domain | Domain | Interproscan |
| PF13188 all species → | PAS_8 | PAS domain | Domain | Interproscan |
| PF02518 all species → | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050351 all species → | Family | Two-component sensor protein kinase | Interproscan |
| IPR003594 all species → | Domain | Histidine kinase/HSP90-like ATPase | Interproscan |
| IPR036097 all species → | Homologous_superfamily | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Interproscan |
| IPR004358 all species → | Domain | Signal transduction histidine kinase-related protein, C-terminal | Interproscan |
| IPR003661 all species → | Domain | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain | Interproscan |
| IPR035965 all species → | Homologous_superfamily | PAS domain superfamily | Interproscan |
| IPR000014 all species → | Domain | PAS domain | Interproscan |
| IPR014310 all species → | Family | Signal transduction histidine kinase, phosphate regulon sensor PhoR | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR005467 all species → | Domain | Histidine kinase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45453 all species → | PHOSPHATE REGULON SENSOR PROTEIN PHOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000155 all species → | Molecular Function | phosphorelay sensor kinase activity | Interproscan |
| GO:0004721 all species → | Molecular Function | phosphoprotein phosphatase activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0016036 all species → | Biological Process | cellular response to phosphate starvation | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
| GO:0004673 all species → | Molecular Function | protein histidine kinase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07636 | phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR | EC:2.7.13.3 | Two-component system | ko02022 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
