Gene detail

Detailed information of HOLI00150.G2181 in Hydra oligactis

Genomic Location: HOLI00150:376082...378703
NR annotation: OGO94923.1, MAG: hypothetical protein A2037_11830 [Curvibacter sp. GWA2_63_95]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00150.g2181.t1

ATGCGCGCTGGAACGGCACTGCTTGAGAACCCCCACACCATGCGCACCACCAAAGCCCAACAAGCCCACAGCCACCGCCTGCTGATCCGCACCGCGGTAGACCTGATGACCCAGCACGGGTTTGACGGCACCACCATGAAACAAATCGCCCGCGCGGCCGACATGGGCGATGCCACCATCTACAAGTACTTCCCAGCAAAGAAAAAACTGGTGCTGGCCTACTTTGAGCAGGCCGTGGAAGACGCCCTGACTGCCATGCGCAAGACCAAGGGGCTGGACAAATTTACGCTGCAAGAGCGCATGCAGCTGCTGGTGGACCACCTGCTGGAAAACCCTGCTGCCCGACCGCGAGTTTGTGGCCCTGGCGCACCAACTGCTCAACAAGGCACCCCTGGCGATGCTCAGCGGCGCCCTGCCCGGCAAGGCGCTGCTGCAGGCCGCGTTTGCCGAGATGCTGGAGGCCGCGCAGGCCAGCGGCGAGATACCACCCTGCGGCTTTCAGGGCAGCCTGTCCAGCCTGATGGCCGACTATGTGTATGCGGTGCTGGGCTTCTGGTTGCGCGATACCTCGGATGGTTTTTCCGATACCACCCGCATGACCGACCTGAGCCTGGGCGTGCTGACCCTGGCCCTGCGCAGCGGCCTGGTGGACCGGCTGCTGGAGCTGGGCGGCTTTTTGCTGCGCAGCCAGCTGGCCCGCCTGATGCAGCCCGGTGGTGGCTGGCTGGACCTGATGCAATTCGCCCGCCAAACCCTGCAAACACCATAGCATCTATGAATACCACCATCACCGAAACCGCGCTGCCCGCACACAGCCAGATTGCCCAGCGCACCGCGGGCGCCGACTTTGCCGACTGCCACACCTTTGCCGACCCGCAGCCCGGCAGCAACGCCATGGAAACCTACCTGGCCGTGATGGGCTACACCCCGGGTTGGATGAACTTTCTGATGTCGGTGCGCAACCAGGCCGGGCGCCTGGTGGGCCTCAAACACCTGGGTGGCATGCAGGTCAAGATGCAGGCGCAAGAGAGCAAACCCGCCGCCCACTACGCCGTGGGCGACCGCGCGGGCATCTTCAGCGTGGACTACCTGTCGGCGCCGGAAGTCATCCTTTTCGATGACGACAAGCACTTGCGTGTAGAGCTATCGGTCTTTAAGCCACCAGCAAGACGGCCAACCCCTGGTGTCGCCAGTCCCTGCATGCCGCAAGCACCGCGCACCAGTAAGCTCGCGCGCAGCGCCATCGTGGGTGCCGCCGCCGCACAGGCCGGGGCCACACAGCTGGCACGCTCGGCAACAAAGCTGGTGCAGCGCGGCGCCAGCGCGGCCGACCAGGAAGCCGCCCGCGTGGAGCACGAGGCCAAGATGGGCCGCATTGCGTTCACCGCGCTCAACCAGCTCAAGGGCACGGCGCTCAAAGCCTCGCAGCTGCTGAGCATGGAGCTGGGCCCGCTGCCCGACGGCGTGCGCCAGCAGCTGGCGCGCGCGCACTACCAAGTCACGCCGCTGAACCGCGCGCTGGTGCTCAAGCTGCTGCGCCAAGAGCTGGGCGACAGCCCCGAAGCGCTGTTTGCTGACTTCGACCTACAGGCCTTTGCCGCCGCCAGCCTGGGCCAGGTGCATGCGGCCACGCTGTTCAGCGGCGAGGCCGTGGCCGTGAAGCTGCAGTACCCCGCCTGGGCCCGAGGCGCTGCCCAACGCCGACATCCAGGCCCGCGTGATGGACAACATCGCCCAGACGCTAACGCAGGAGCTGGACTATCTGCACGAGGCCGACCAGCTGCAGTGGTTTGCCCGGCACCTGCAGCACCCACACCTGGTGCTGCCCCAGCCGTATATGGACCGCACCACACCGCGCCTGCTGACCATGCTAGCGCCTGCACGGCCAACACTTGGCCGAGTGGCTGGCCACCCAGCCCAGCCAGGCCCAGCGCGACCACTACGGCCAGCTGCTGTTTGACACCTTCATGCAATGTGCCTGGGGGGCTGCAGCGTATACAGGCCGACCCGCATGCGGGCAACTACCTGTTTATGGCTGAGGGCCAGTTGGGCTTGCTGGACTTTTGGCTGCACGCGCACACTGTCGCCCCTGTTTTGCGAGCAGGCCGCCATTGTCTGGAGGCCGCCGCGCTGCGCCACCCCAAAGACACGGCGGCGCTGCGCAACGCCTACCTGGCGCTGGAGCTGATTGACCCCGCGCTGGACCTGCACCGCTTTGAGACCGAGCTGCTACCCGCGCTGGCAGGCTGGCAAGACTGGCAATGCCTGCCACTGCAAAGCGCGGTGTACGACTTTGGCCAGTTGCCACCACCGCCCCAGCCCGACGCCGCCGCACGGCGCACCGCCACGCACTACCTGCGTGCCGTGCCGCCAGACCTGCCCCACTTTGACCGCGCCCATCTGGGGATGACGCAGATGCTGCGCAGCCTGGGCGCCCGCGTGCGCACCCGCAACCCTGGATTTTAG

Transcript

HOLI00150.g2181.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4XPM5	Probable protein kinase UbiB OS=Ectopseudomonas mendocina (strain ymp) OX=399739 GN=ubiB PE=3 SV=1
Q3KJC7	Probable protein kinase UbiB OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=ubiB PE=3 SV=1
P9WQI0	Uncharacterized protein MT0675 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0675 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11066 all species →	DUF2867	Protein of unknown function (DUF2867)	Family	Interproscan
PF03109 all species →	ABC1	ABC1 atypical kinase-like domain	Domain	Interproscan
PF00440 all species →	TetR_N	Bacterial regulatory proteins, tetR family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021295 all species →	Family	Protein of unknown function DUF2867	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050154 all species →	Family	UbiB protein kinase	Interproscan
IPR004147 all species →	Domain	ABC1 atypical kinase-like domain	Interproscan
IPR001647 all species →	Domain	DNA-binding HTH domain, TetR-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10566 all species →	CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00150.G2181.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →