Detailed information of HOLI00256.G40586 in Hydra oligactis

Genomic Location: HOLI00256:234530...234823
NR annotation: WP_031570284.1, transcription elongation factor GreB [Pararheinheimera texasensis]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q87TB8Transcription elongation factor GreB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=greB PE=3 SV=1
Q9KNL7Transcription elongation factor GreB OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=greB PE=3 SV=1
Q8DDU7Transcription elongation factor GreB OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=greB PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0013299 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03449
all species →		GreA_GreB_NTranscription elongation factor, N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018151
all species →		Conserved_siteTranscription elongation factor, GreA/GreB, conserved siteInterproscan
IPR022691
all species →		DomainTranscription elongation factor, GreA/GreB, N-terminalInterproscan
IPR036805
all species →		Homologous_superfamilyTranscription elongation factor, GreA/GreB, N-terminal domain superfamilyInterproscan
IPR023459
all species →		FamilyTranscription elongation factor GreA/GreB familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30437
all species →		TRANSCRIPTION ELONGATION FACTOR GREAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0032784
all species →		Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0006354
all species →		Biological ProcessDNA-templated transcription elongationInterproscan
GO:0070063
all species →		Molecular FunctionRNA polymerase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI00256.G40586.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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