Gene detail

Detailed information of HOLI00264.G2953 in Hydra oligactis

Genomic Location: HOLI00264:114422...115739
NR annotation: WP_063461791.1, MULTISPECIES: trigger factor [unclassified Acidovorax]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B9MG13	Trigger factor OS=Acidovorax ebreus (strain TPSY) OX=535289 GN=tig PE=3 SV=1
A1W5B5	Trigger factor OS=Acidovorax sp. (strain JS42) OX=232721 GN=tig PE=3 SV=1
A1TM63	Trigger factor OS=Paracidovorax citrulli (strain AAC00-1) OX=397945 GN=tig PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0019281 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05698 all species →	Trigger_C	Bacterial trigger factor protein (TF) C-terminus	Family	Interproscan
PF05697 all species →	Trigger_N	Bacterial trigger factor protein (TF)	Family	Interproscan
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036611 all species →	Homologous_superfamily	Trigger factor ribosome-binding domain superfamily	Interproscan
IPR005215 all species →	Family	Trigger factor	Interproscan
IPR027304 all species →	Homologous_superfamily	Trigger factor/SurA domain superfamily	Interproscan
IPR037041 all species →	Homologous_superfamily	Trigger factor, C-terminal domain superfamily	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR008880 all species →	Domain	Trigger factor, C-terminal	Interproscan
IPR008881 all species →	Domain	Trigger factor, ribosome-binding, bacterial	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30560 all species →	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0043335 all species →	Biological Process	protein unfolding	Interproscan
GO:0044183 all species →	Molecular Function	protein folding chaperone	Interproscan
GO:0051083 all species →	Biological Process	'de novo' cotranslational protein folding	Interproscan
GO:0061077 all species →	Biological Process	chaperone-mediated protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03545	tig; trigger factor	-	Protein processing	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.