Genomic Location: HOLI00299:231305...232788
NR annotation: WP_051685816.1, SNF2-related protein [Pararheinheimera texasensis]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00299.g46705.t1 |
| Transcript |
| HOLI00299.g46705.t1 |
| Protein |
| HOLI00299.G46705 |
| UniProt accession | Description |
|---|---|
| A7ZI07 | Zorya protein ZorD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=zorD PE=1 SV=1 |
| P94593 | Putative ATP-dependent helicase/translocase YwqA OS=Bacillus subtilis (strain 168) OX=224308 GN=ywqA PE=1 SV=2 |
| F8VPZ5 | DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013221 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04471 all species → | Mrr_cat | Restriction endonuclease | Family | Interproscan |
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR011335 all species → | Homologous_superfamily | Restriction endonuclease type II-like | Interproscan |
| IPR049730 all species → | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| IPR011856 all species → | Homologous_superfamily | tRNA endonuclease-like domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR007560 all species → | Domain | Restriction endonuclease type IV, Mrr | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10799 all species → | SNF2/RAD54 HELICASE FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008094 all species → | Molecular Function | ATP-dependent activity, acting on DNA | Interproscan |
| GO:0004519 all species → | Molecular Function | endonuclease activity | Interproscan |
| GO:0009307 all species → | Biological Process | DNA restriction-modification system | Interproscan |
HOLI00299.G46705.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
