Genomic Location: HOLI00353:458703...459734
NR annotation: TXH95059.1, NADH:ubiquinone reductase (Na(+)-transporting) subunit F [Rheinheimera sp.]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00353.g43212.t1 |
| Transcript |
| HOLI00353.g43212.t1 |
| Protein |
| HOLI00353.G43212 |
| UniProt accession | Description |
|---|---|
| Q12QK1 | Na(+)-translocating NADH-quinone reductase subunit F OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=nqrF PE=3 SV=1 |
| Q75R59 | Na(+)-translocating NADH-quinone reductase subunit F OS=Vibrio anguillarum OX=55601 GN=nqrF PE=3 SV=1 |
| A5F5Y4 | Na(+)-translocating NADH-quinone reductase subunit F OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=nqrF PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012601 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00175 all species → | NAD_binding_1 | Oxidoreductase NAD-binding domain | Domain | Interproscan |
| PF00111 all species → | Fer2 | 2Fe-2S iron-sulfur cluster binding domain | Domain | Interproscan |
| PF00970 all species → | FAD_binding_6 | Oxidoreductase FAD-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017938 all species → | Homologous_superfamily | Riboflavin synthase-like beta-barrel | Interproscan |
| IPR010205 all species → | Family | Na(+)-translocating NADH-quinone reductase subunit F | Interproscan |
| IPR001433 all species → | Domain | Oxidoreductase FAD/NAD(P)-binding | Interproscan |
| IPR036010 all species → | Homologous_superfamily | 2Fe-2S ferredoxin-like superfamily | Interproscan |
| IPR017927 all species → | Domain | FAD-binding domain, ferredoxin reductase-type | Interproscan |
| IPR001041 all species → | Domain | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Interproscan |
| IPR039261 all species → | Homologous_superfamily | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Interproscan |
| IPR012675 all species → | Homologous_superfamily | Beta-grasp domain superfamily | Interproscan |
| IPR008333 all species → | Domain | Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43644 all species → | NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006814 all species → | Biological Process | sodium ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016655 all species → | Molecular Function | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00351 | nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F | EC:7.2.1.1 | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
