Detailed information of HOLI00520.G48831 in Hydra oligactis

Genomic Location: HOLI00520:198887...200004
NR annotation: XP_002161794.1, putative ascorbate peroxidase [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q539E5Putative ascorbate peroxidase OS=Hydra viridissima OX=6082 GN=APX1 PE=2 SV=1
Q5AEN1Cytochrome c peroxidase, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CCP1 PE=3 SV=2
Q6C7U1Putative heme-binding peroxidase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=YALI0D25366g PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009662 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00141
all species →		peroxidasePeroxidaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019793
all species →		Binding_sitePeroxidases heam-ligand binding siteInterproscan
IPR002016
all species →		DomainHaem peroxidaseInterproscan
IPR044831
all species →		FamilyHeme-binding peroxidase Ccp1-likeInterproscan
IPR010255
all species →		Homologous_superfamilyHaem peroxidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31356
all species →		THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004601
all species →		Molecular Functionperoxidase activityInterproscan
GO:0006979
all species →		Biological Processresponse to oxidative stressInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan
GO:0000302
all species →		Biological Processresponse to reactive oxygen speciesInterproscan
GO:0034599
all species →		Biological Processcellular response to oxidative stressInterproscan
GO:0042744
all species →		Biological Processhydrogen peroxide catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI00520.G48831.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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