Gene detail

Detailed information of HOLI00522.G17049 in Hydra oligactis

Genomic Location: HOLI00522:358795...359815
NR annotation: MBY0419910.1, translation initiation factor IF-2 [Pararheinheimera sp.]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3IJ53	Translation initiation factor IF-2 OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=infB PE=3 SV=1
Q65SK9	Translation initiation factor IF-2 OS=Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 GN=infB PE=3 SV=1
A3N005	Translation initiation factor IF-2 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=infB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002610 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11987 all species →	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF02033 all species →	RBFA	Ribosome-binding factor A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000178 all species →	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR023115 all species →	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR015946 all species →	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan
IPR036925 all species →	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR015760 all species →	Family	Translation initiation factor IF- 2	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR000238 all species →	Family	Ribosome-binding factor A	Interproscan
IPR023799 all species →	Homologous_superfamily	Ribosome-binding factor A domain superfamily	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381 all species →	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00522.G17049.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.