Detailed information of HOLI00522.G17056 in Hydra oligactis

Genomic Location: HOLI00522:363463...363948
NR annotation: WP_031568366.1, ribosome maturation factor RimP [Pararheinheimera texasensis]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15V74Ribosome maturation factor RimP OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=rimP PE=3 SV=1
B4RXT6Ribosome maturation factor RimP OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rimP PE=3 SV=2
Q482U1Ribosome maturation factor RimP OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=rimP PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0022091 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02576
all species →		RimP_NRimP N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035956
all species →		Homologous_superfamilyRimP, N-terminal domain superfamilyInterproscan
IPR028989
all species →		DomainRibosome maturation factor RimP, N-terminalInterproscan
IPR003728
all species →		FamilyRibosome maturation factor RimPInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33867
all species →		RIBOSOME MATURATION FACTOR RIMPInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000028
all species →		Biological Processribosomal small subunit assemblyInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0042274
all species →		Biological Processribosomal small subunit biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09748rimP; ribosome maturation factor RimP-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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