Gene detail

Detailed information of HOLI00522.G17067 in Hydra oligactis

Genomic Location: HOLI00522:371560...371952
NR annotation: WP_031568375.1, transcription elongation factor GreA [Pararheinheimera texasensis]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0A6W7	Transcription elongation factor GreA OS=Escherichia coli O157:H7 OX=83334 GN=greA PE=3 SV=1
P0A6W6	Transcription elongation factor GreA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=greA PE=3 SV=1
P0A6W5	Transcription elongation factor GreA OS=Escherichia coli (strain K12) OX=83333 GN=greA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03449 all species →	GreA_GreB_N	Transcription elongation factor, N-terminal	Domain	Interproscan
PF01272 all species →	GreA_GreB	Transcription elongation factor, GreA/GreB, C-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006359 all species →	Family	Transcription elongation factor GreA	Interproscan
IPR036805 all species →	Homologous_superfamily	Transcription elongation factor, GreA/GreB, N-terminal domain superfamily	Interproscan
IPR023459 all species →	Family	Transcription elongation factor GreA/GreB family	Interproscan
IPR036953 all species →	Homologous_superfamily	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Interproscan
IPR018151 all species →	Conserved_site	Transcription elongation factor, GreA/GreB, conserved site	Interproscan
IPR028624 all species →	Family	Transcription elongation factor GreA/GreB	Interproscan
IPR022691 all species →	Domain	Transcription elongation factor, GreA/GreB, N-terminal	Interproscan
IPR001437 all species →	Domain	Transcription elongation factor, GreA/GreB, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30437 all species →	TRANSCRIPTION ELONGATION FACTOR GREA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan
GO:0006354 all species →	Biological Process	DNA-templated transcription elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03624	greA; transcription elongation factor GreA	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.