Gene detail

Detailed information of HOLI00580.G29804 in Hydra oligactis

Genomic Location: HOLI00580:22187...24976
NR annotation: WP_234639117.1, PilT/PilU family type 4a pilus ATPase [Delftia tsuruhatensis]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00580.g29804.t1

ATGGTGCGCGCCATGCTCTCCGAATCGCTGCAGGCCGTGATCTCGCAGACGCTGTGCAAGACCAAGGATGGACAGGGCCGTATCGCGGCCCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGATCCGCGAGGCCAAGCCCCGCCGAGGCGCGCGGCAAAGCCAAGATCCCGGAAGAATTTCCCGGGCTGAGCAAGGAAAGGTCACGCGCGTGAAAAAGCATTTTCCGCAGGCTGCGCCAGAACGGGCCGCCCCAGGGCTCCGCTCCGGAGTCGGCCTTCTTCACGACCACGCTGGCTGCACACGGCTATCTCGACCCCCATACGCCCCCGTGCCCTGGGAGGCGCGCGCCATCGAGGTCGGCGCCACGCGGCTGACGCAGCGTGCGGGCGGCGCCCAGCTGGCCCAGCTGTGGGAGCGCGACCGCTACCTGGGACAGCTGGGAGAGCGCCGGGCCTGCTTACAGTTGGGCGGACTACTTCAGCTTTGCCGCCCATCGCGCCGCAGCGCGTGCGGTGATCCGGCAGGACGAGAACGGCAGCTTCATGGCCGTCGTGCTGTCGGGGCAGATCGCCGTCGAGCGCCAGCAGCCCTGGGGGCGAGCGCATGCGCCTGGCCCAGACACGGCCGGGCGACATCCTGGGCGAGATGTCGCTGCTGGACGGCGGACCGCGCTTTCCAGCTGCACCACGCTGACCGACTGCGAGGTCGGCGTGCTCAGCGCCGAGGCGCTGGACGAGATGATGGTCAGGAACGCCCCGCTGGCGGCCGGCTCGGCGGCCCTGCTGGCCGAAACTGTCGTTCCGGCTGCGCGCCATCAGCGTGCGCCTGGGCGAAGAGCAGCACACTTAGCAATGCGTGGCGCCCGGTCCGGGGCGCCGGCCGGGCGGCGAGGCGCCCGCCACCACACTTGGCGTCTTGGAAAAGACCAGCGCGCGCAGCGCACAATGCCAGGAGAACAGCAATGGAAAGAGATCAGGCGAGCAAGTTCATCAACGACCTGCTCAAGCTCATGGTCAGCCGCAACGGCAGCGACCTCTTCATCACGGCGGAATTCCCGCCCGCCATCAAGATCGACGGCAAGATCACCAAGGTCTCGCCCCAGCCGCTGGCCGCCGTGCACACGCTGACGCTGGCGCGCTCCATCATGAGCGACAGGCAGATCGCCGATTTCGAGCGCTCCAAGGAGTGCAATTTCGCGATCTCCCGCCCAGGGGCGCGTGGGCATGGTGCTGCGGACCATCCCGATCTCGCTGCCCACCATCGACAGCCTGGGCGTGCCGCAGGTGCTCAAGGAGGTGGTCATGACCAAGCGCGGCCTGTGCATCCTGGTCGGGGCCACGGGTTCGGGCAAGTCCACGACGCTGGCGGCCATGGTGGACTGGCGCAACGAGAACTCCTATGGCCACATCGTGACCATCGAGGACCCCATCGAATTCGTGCACCCGCACAAGAACTGCGTGGTCACGCAGCGCGAGGTGGGCCTGGACACCGACAGCTGGGATGCGGCGCTCAGAGCCTCGCTGCGCCAGGCGCCCGACGTGATCCTGATGGGCGGATCCGCGACCGCGAGACCATGGAGCATGCCATCGCCTTCTCGGAAACCGGCCATCTGTGCCTGGCCACGCTGCACGCCAACAGCGCTAACCAGGCGCTGGACCGCATCGTCAACTTCTTCCCCGAGGAACGCCGCTCCCAGCTGCTGATGGACCTGTCGCTGAACCTGCGCGCCATGGTCTCGCAGCGGCTGCTGCCCAAGCGGGACAGCAAGGGCCGCGTGGCCGCCATCGAGGTGATGCTCAACTCGCCCGCTGATCTCCGACCTGATCTTCAAGGGCGAGGTCACCGAGATCAAGGAGATCATGAAAAGAGGCCGCAACCTCGGCATGCAGACCTTCGACCAGGCGCTGTTCCGACCTGTTCCAATCCAATCTGGTCACCTACGAGGATGCCTTGCGCAACGCCGACTCGGTCAACGACCTGCGGCTGCAGATCAAGCTGGGCAGCCAGCGCGCCAGTCCCCGATCCTGAGCGGCGGGCACGAGCATTTCGCCATCGTCTGAAAACCATGTGGAACCGCGCCTTCGCGCGCGCAGGCCTGCGGGCTCCTTCCAGGGACAGCCGCCCCACGGCATGCCGCCCTGTGCCACCCGCTCCCACCCTTCAGGAATCCTGTCCCATGTCCGACTCCTCCATCGCCGCCCGCAGCTATGCGGACACCGTCCCCCCTTTCCGTCGCCTTCCTGGGGCTTGGCGTCATGGGCTACTCCATGGCCGGCCACCTGGCCACGGCCGGTCACCGCGTCACGGTCTACAACCGCACGCCGGCCAAGGCCGCGCCTGGTGCGAGGAGTTCAACGGCGGCCATGCGGCCACGCCGCGCGAGGCCGTGGCCGGCGCAGACATCGTTTTTTGCTGCGTCGGCAATGACGACGACCTGCGCTCAGTGGTGCTCGGCCCCGATGGCGCCTTCGCCGGCATGCGCCGCGGCGCCATCTTCGCCGACCACGACGGCCTCGGCCGAGGTCGCGCGCGAGCTGCATGCGGCCGGGCTGGAGCTGGGCCTGCAGTTCATCGATGCGCCCGTCTCGGGCGGCCGGGCCGGTGCGCAAAACGGCCAGCTCACCGTGATGTGCGGCGGCGATGA

Transcript

HOLI00580.g29804.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3XCX3	Type IV pilus ATPase PilU OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pilU PE=1 SV=1
O33730	Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=Sfri_1503 PE=3 SV=2
P24559	Type IV pilus retractation ATPase PilT OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pilT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03446 all species →	NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	Domain	Interproscan
PF00437 all species →	T2SSE	Type II/IV secretion system protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006115 all species →	Domain	6-phosphogluconate dehydrogenase, NADP-binding	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001482 all species →	Domain	Type II/IV secretion system domain	Interproscan
IPR050921 all species →	Family	Type IV secretion system ATPases	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30486 all species →	TWITCHING MOTILITY PROTEIN PILT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00580.G29804.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.