Genomic Location: HOLI00580:81052...83948
NR annotation: WP_016446620.1, MULTISPECIES: tripartite tricarboxylate transporter substrate binding protein [Delftia]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00580.g29865.t1 |
| Transcript |
| HOLI00580.g29865.t1 |
| Protein |
| HOLI00580.G29865 |
| UniProt accession | Description |
|---|---|
| Q45389 | Protein BugT OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=bugT PE=3 SV=2 |
| P27103 | UPF0065 protein in tcbD-tcbE intergenic region OS=Pseudomonas sp. (strain P51) OX=65067 PE=3 SV=1 |
| O06702 | UPF0065 protein BB4329 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=BB4329 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014520 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03401 all species → | TctC | Tripartite tricarboxylate transporter family receptor | Family | Interproscan |
| PF01963 all species → | TraB_PrgY_gumN | TraB/PrgY/gumN family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005064 all species → | Family | Bordetella uptake gene | Interproscan |
| IPR042100 all species → | Homologous_superfamily | Bordetella uptake gene, domain 1 | Interproscan |
| IPR002816 all species → | Family | TraB/PrgY/GumN family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42928 all species → | TRICARBOXYLATE-BINDING PROTEIN | Interproscan |
HOLI00580.G29865. This gene does have a gene model — the search simply returned no hit.HOLI00580.G29865.
