Genomic Location: HOLI00580:215117...217353
NR annotation: RYF53223.1, type VI secretion system tip protein VgrG, partial [Comamonadaceae bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00580.g29988.t1 |
| Transcript |
| HOLI00580.g29988.t1 |
| Protein |
| HOLI00580.G29988 |
| UniProt accession | Description |
|---|---|
| Q9I737 | Type VI secretion system spike protein VgrG1b OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1b PE=3 SV=1 |
| Q9I0F3 | Type VI secretion system spike protein VgrG1c OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1c PE=1 SV=1 |
| Q9I741 | Type VI secretion system spike protein VgrG1a OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0016404 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04717 all species → | Phage_base_V | Type VI secretion system/phage-baseplate injector OB domain | Domain | Interproscan |
| PF05954 all species → | Phage_GPD | Phage tail baseplate hub (GPD) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017847 all species → | Family | Type VI secretion system, RhsGE-associated Vgr family subset | Interproscan |
| IPR006533 all species → | Family | Type VI secretion system, RhsGE-associated Vgr protein | Interproscan |
| IPR050708 all species → | Family | Type VI secretion system VgrG/RHS | Interproscan |
| IPR006531 all species → | Domain | Gp5/Type VI secretion system Vgr protein, OB-fold domain | Interproscan |
| IPR037026 all species → | Homologous_superfamily | Vgr protein, OB-fold domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32305 all species → | - | Interproscan |
HOLI00580.G29988. This gene does have a gene model — the search simply returned no hit.HOLI00580.G29988.
