Gene detail

Detailed information of HOLI00580.G30129 in Hydra oligactis

Genomic Location: HOLI00580:348305...350536
NR annotation: WP_063459996.1, 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein [Acidovorax sp. GW101-3H11]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00580.g30129.t1

ATGTCCCGATTTCAAGTGAAGAAAGTCGCCGTGCTCGGCGCAGGCGTGATGGGCGCGCAGATTGCGGCCCACCTCGTCAACGTGAAGGTGCCCGTGGTGCTGTTCGACCTGCCCGCCAAAGAAGGCCCGAAGAGCGGCATCGTCGACCAAGGCCATCGAAGGCCTCAGGAAGCTCAAGCCCTCGCCCATGGGCGTGGCCGAGGACGCGGCGCTGATCCAGGCAGGCCAACTACGAGGAGCACATGCACGCTGCTCAAGGAATGCGACCTCGTGATCGAGGCCATTGCCGAGCGCATGGACTGGAAGCTCGACCTGTACACCAAGATCGCGCCCCATGTGGCCAAGCACGCCATCCTGGCGTCCAACACCTCGGGCCTGTCGATCACCAAGCTCTCCGAGGTGCTGCCTGAGAGCATCAAGCCGCGTTTCTGCGGCATCCACTTCTTCAACCCGCCGCGCTACATGACGCTGGTGGAGCTGATCAACACCCCCACCACCCAGGCCCGAAGTGCTCGACCAACTCGAAGCCTTCGTCACCAGCGGCCTGGGCAAGGGCGTGGTGCGCGCGCACGACACCCCCAACTTCATGGCCAACCGCATGGGCATCGCCGGCATGCTGGCCACCATGAAGGAGGTCGAGAACTTTGGCCTGACCTACGACGTGGTGGACGACCTCACGGGCAAGAAGCTGGGCCGCGCATCGAGCGGCACCTTCCGCACGGCCGACGTGGTGGGCGCTGGACACCATGGCCCATCTTCGAGCTGGAAAGCGAGGAGTACGTGCCCGCCGGCCAGAAGGCCGACGAGGTGCTATGCCCGCATGCTCAAGAAGCCCGCTGCCGAGCGCCTGAGCCTGCTGCGCCAACGCCGAAGGCGCGCCCGGCCAGTTCCTGTGGGCTATCCTGCGCAACAGCTTCCACTACGCCGCCATGCACCTGGGCACCATCGCGGACAACGGCACGTGATGTGGACCAGGCCATGCGCTGGGGCTTCGGCATGAAGCAGGGCCCCTTCGAGTTGTGGCAGGAAGCGGGCTGGCTCGACGTGGCGAAAATGGTCCAGGAGGACATCGATGCGGGCAAGGCGCTGTGCAAGGGCGCCGCTGCCCGAGTGGGTGTTCGAAGGGCCCTGTGGCCGAAGCTGGTGGCGTGCACACCGCCCAGGGCTCGTGGAGCGCATCGCAAGGCCAATTTGTGCCCCGTCGCCAACTGCCCGTGTACGAGCGCCAGCTCTTCCCCGAGGCCCTGCTGGGCGAAACCAACCTGCCCGACTGGACGCACGGCTGGCACCACCATTGCTGAATCGAAAGCCCTGCGCACCTGGACGCTGGACGGCCAGGTGCTCATCGCCAGCATCAAGAACAAGATGCACGCCATCAGCCCCGAGGTGATGGAGGCGCTGATGGAGGCCTGGAACTGGCCGAGTCTGAGTACCAGGGCATGGTCATCTGGTCTGGCGACGCGCCGTTCAGCGTGGGTGCGGACCTGGAGGCCACCATGCCCGCCTTCATGGTCGGCGGCGCCGATGCCGGTAGAAAGCATCGAGCAGGAGCTGCAAAACCTGATGATGCGCATCCGCTATGCGCAGGTGCCTGTCGTCGCGGCCATCCATGGCATGGCGCTGGGCGGTGGCTGCGAACTGGCCGTGTACTCGGCCAAGCGCGTGGCCCACATGGAAAGCTACATCGGCCTGGTGGAAGTGGGTGTGGGCCTGGTGCCCGGCGCTGGCGGCCTGACCTACATTGCGCCGCCGCGCGGCCGAGAACATGGCCGCCTCTACCAGCAAGGACATCCTGCCCTTCCTGACCGAGGGCTTCACTGCCGCTGCGATGGCCAAGGTAGGCACCAGCGCGATCGAATCGCGCAAGCTGGGCTTCCTGCTGGACAGCGACGTCATCGTGCCGCACAAGGACGAGCTGCTGTTCGTGGCCATCAACGAGGCCAAGTCCATGGCCGCCAGCGGCTGGCGCGCGCCCACAAGCGCCTGTTCCCTGTGGCAGGCCGCAGTGGCATGGCCACCATCAAGGGCACAGCTGGTGAACATGCGCGACGGCGGTTTCATCAGCGCCTATGA

Transcript

HOLI00580.g30129.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4UL32	Putative fatty acid oxidation complex trifunctional enzyme OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=RF_0890 PE=3 SV=1
Q68WH7	Putative fatty acid oxidation complex trifunctional enzyme OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=RT0547 PE=3 SV=1
Q92HC9	Putative uncharacterized protein RC0842 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=RC0842 PE=5 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004654 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075 all species →	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00580.G30129.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.