Gene detail

Detailed information of HOLI00580.G30143 in Hydra oligactis

Genomic Location: HOLI00580:364440...367631
NR annotation: WP_015012474.1, biotin carboxylase N-terminal domain-containing protein [Acidovorax sp. KKS102]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00580.g30143.t1

ATGCCGCAGGCATGGCGAAGCAGATTGCCCGTGCACGCGCAGCGTGCAGGCGGGCGATGGAGCCGCGCGGGCACAGCCTATGAAAAAGATCCTCATCGCCAACCGCGGCGAAATCGCCCGCCGCATCATCCACACCGCCCAGCGCATGGGCATCGACACGGTCGCGCCACGCAGGCCGTGGCCCTGGGCGGCGCGGCCAGTGCCGACAGCTACCTGCGCGCCGACAAGCTGCTGGCGGCCGCGCGCGCCACGGGCGCCAATGCGGTGCACCCCGGCTACGGCTTCCTCAGCGAGAACGCCGACTTCGCCCAGGCCGTGGTCGATGCCGACTCGGCCTGGATCGGCCCGCCGCCCGCCGCCATCCGCGCGCTGGGCAGCAAGGCAGGCGCCAAGGCGCTGGCGGCCGCGCACGGCGTGCCCTGCCTGCCCGGCTATGCGGGGGAGGACCAGGGCGACGAACGTTTTGCCAGCGAGGCCGCGCGGGTCGGCTACCCGCTCATGGTCAAGGCCGTGGCAGGCGGGGGCGGGCGGGGCATGCGCCTGGTCACCGAGGCAGCGCAACTGCCCGCCGCATTGGCCAGCGCCCGGTCGGAAGCCCTGGCGGGCTTTGGCTGCGGCGACCTGCTGATCGAACGCGCACCGCTGCAGCCGCGCCATGTGGAGGTGCAGGTGTTTGCCGATGCGCACGGCGCCTGCATCCACCTGGGCGAGCGCGACTGCTCGGTGCAGCGCCGCCACCAGAAGATCATCGAGGAATCCCCCAGCCCGGCCGTGGACGCCGCGCTGCGCGAACGCATGGGCGCGTGCGCCGTGGCGCTGGCGCAGGCGGCGAACTATGTGGGCGCGGGCACGGTGGAGTTTCTGCTGGACGGCCAGGATTTCTATCTGATGGAGATGAACACCCGCCTGCAGGTGGAGCACCCGGTGACGGAAGCTCTCACCGGCCTGGACCTGGTCGAGTGGCAGATCCGCGTGGCGCGCGGCGAGCCGCTGCCCATGACCCAACCGCAGCGCGCCCCCGCCACGGTCTTCGGACGTGCCGCCCCGGGTGCGCTGCGTTTTGACCACGCGCTGGAAGAGGGCGCCGAAGTCACGCCCCACTACGACGCCATGCTGGGCAAGCTCATCGTGCACGCGCCCACGCGGGCCGAGTCGATCGCCGCCCTGGTGCGCGCGCTGCAGGGCACGCGCGTGCTGGGCCTGCCCACCAACCGCGCATTTCTGGCGGCCTGCCTGCAGCACCCGGTGTTTGCCGCCGGGCAGGCGCTGGTGCCGTTTCTGGCAGAGCATGCGGCGGGTCTGCAGGATCTGCTATCAAAACAAGAGCTGTCAGCGCTTGTCCCTTCTGCGCTGGAGGCCATTTTTTCTTCAAACCACTCCCCCAGCCTGCCCTGTGCGCTCGCCCGCCCGCTGCGCCTGCGCCACCAGGGCCAGGTGCACGTGGTGGCCGTGCGCGCGCTGGGGGGCGGGCGGCTGCAGGTGGAACAGGCCGGCGCCGAGTCCACGGCCAGCGCCGCCGCCACCACGCTGCAACTGCCCCAGCGCGGCGTGTACTGCGTGGCGGTGGGCCCCCGGCGCTGGCACTGGCAAACCGGCGGCGTGGACGGCTGGGTGGAAGACGCATCGTGGGAGCCCGCCGCGCGCGCTGGCGGTGGCAACGGCGCCACCGAGCTGCGCGCGCCCTTCAACGGCAAGGTGGTGGCGCTGCCCGTGGCGGCTGGGCAGGCGCTGGCGGCGGGCGACACCGTGGTGGTCATCGAATCCATGAAGCTCGAACACAGCCTGGCCAGCCCCGTGGCCGCCACCGTGGCCGAGCTGCTGGTGGCCCCCGGCCAGCAGGTGGCGCCCGGCCAGGTACTGGCACAGCGCACCGCGCTCGCCGACACCGTCACGCGTTTTGCCCGCACCGAGATCGCGCCGCATGTGGATGCGTGGGACGCGGCGGGCGAGTTTCCGCGCACGCTGTACCGCCGCGCGGCCGACCTGGGCCTGCTCGGCCTGGGCTACCCCGAGCAGTACGGCGGCACGCCCGTCAGCTACGCCTTGCGCCTGCCGCTGTGGCGCGCGCTCAGCCGCCACGGCGCCAGCGGCGGCGTGCTGGCCAGCCTGCTGTCGCACAACATCGGCCTGCCGCCGGTGCTGGCCCACGGCAGCGACGCCGTGCGCGCCGAGGTCATCCCGAGCGTGCTGGCGGGTGAGCAGATCGCCGCGCTGGCCATCACCGAGCCCGGAGGCGGCTCGGACGTGGCGCAGCTCAAGACCACCGCGCGGCGCGAGGGTGACGAGTACGTGGTGAACGGCGAGAAGGTGTTCATTACTTCCGGTATGCGCGCGGACTGGATCACGGTGGCCGTGCGCACCGGCGATGCAGGAAGCAAGGGCAGCGCAGGCATCTCCATGCTGCTGGTGCCCGGCCACAGCCCGGGCCTGTCGCGAAGCAGGCTCGACAAGATGGGCTGGCTCTGCTCCGACACCGCCCACCTGCGCTTCGACAACGTGCGCGTGCCCGCGCGCTACCTGCTGGGCGAGGAGGGCGCGGGCTTTCGCATCATCATGGCCAACTTCAACGGCGAGCGTTTTGGCCTCGCCGCATCGGCCCTGGGCTTTGCCGAGGCCTGCTACGACGAGGCCCTGGCCTGGGCCCGCCAGCGCAAGACCTTTGGCGCCGCGCTGGTGGAGCACCAGGTCATCCGCCACAAGCTGGTGGACATGCAGATGCGCATCCAGTCCACGGCCGCGTGGTGCGAATCAGTCGCTGCGCACGCCGATGCGGGATGCACCGGCCCTGAGTGGGTAGCGCAGGTGTGCCTGCTCAAGAACCACGCGACACAAACCATGCAGTTCTGCGCCGACCAGGCCGTGCAGATCCTGGGCGGCATGGGCTTCATGCGCGGCACCGCCAGCGAGCGCATCTACCGCGAGGTCAAGGTCATGATGATCGGCGGCGGCGCGGAAGAAATCATGAAGGACCTGGCGGCGCGGCAGCTAGGGATTTGA

Transcript

HOLI00580.g30143.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0A509	Biotin-dependent 3-methylcrotonyl-coenzyme A carboxylase alpha1 subunit OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=accA1 PE=3 SV=1
P9WPQ2	Biotin-dependent 3-methylcrotonyl-coenzyme A carboxylase alpha1 subunit OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=accA1 PE=3 SV=1
P9WPQ3	Biotin-dependent 3-methylcrotonyl-coenzyme A carboxylase alpha1 subunit OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=accA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR050856 all species →	Family	Biotin-dependent Carboxylase Complex	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18866 all species →	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00580.G30143.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.