Gene detail

Detailed information of HOLI00580.G30148 in Hydra oligactis

Genomic Location: HOLI00580:371515...373497
NR annotation: WP_056745867.1, 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Acidovorax sp. Root568]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00580.g30148.t1

ATGCAAACCATCCGCTACGAACTCATCCCCGCCCAAGGCACCGAAGGCCAGGTCGCCGTCATCACGTTTGACGAAACCAACTCCCCCGTCAACACCATGTGCCGCCAGTGGCAGCAAGAGCTAGGCGAGGTCACGGCCCAGGTGCTGGGCGACCGCGAACGCCTGGGCACGGCCCTCAAGGGCATCGTGCTCGCATCCGCCAAGACCAGCTTCTTGCTTGGCGCCGACCTCAAGGCCACCATGCGCCTGACACCCGCCGACGCGCCCGCCGTGTTCGGCGAGATCGAGCGCATGAAGAAACACTTTCGCACGCTCGAAACCCTGGGTATCCCCGTCGTGGCCTGCCTCAACGGCGCGGCGCTGGGCGGCGGCTGGGAGGTGGCCCTGATCGCCCACTACCGCATCGCCGTGGCCGACCCCAGGATCCAGTTCGGCCTGCCCGAGGTGACGCTGGGCCTGATGCCCGGCGCCACCGGCGTGACCAAGATGACGCGCCTGCTGGGCCTGATGGGCGCGCAGCCCTACATCCTGGAAGGCAAGCTCTTCAACCCCGCCGAGGCGCTGGAGCTGCAACTGGTGCACGAGCTGGTGGCCACGCGCGAGCAACTGCTCCCCGCCGCCCTGGCCCACATCGCCACCCACCCGCACGCCGTGCAGCCGTGGGACGACAAGAACTACAAAATGCCCGGCGGCACACCCGCCAACCCCAAGATCGCTGGCGCCCTCACCGTGGCGCCCGCCATGCTCAAGAAGACCACCCGCGGCCGCTACCCCGCGCCCGAGGCCGCGCTGGCCGCCATGGTCGAAGGCGCCATGGTGGACTACGACACCGCCCTGCGCATCGAAAGCCGCTACCTCGCCCGCCTGATGACCGGCCCCGTGGCGCGCAACACGATCAACACATTCTTCTTCGACATGAACGCGATCAAGAGTGGCAAGTCACGCCCCGGCACCACGCCACGCTACAAGCCACAAAAGGTTGGCATCCTGGGCGCCGGCATGATGGGCGCGGGCATCGCCTGGGCCCAGGCCAGCCGGGGCATCGCCACCGTGCTCAAGGACGTGAGCACCGAGAAGGCCGAGGCGGGCAAGGCCTACAGCGCCAAGCTCACGCAGGCCCGCGTGGACAAGGGCCGCATGACGGCCGAGGCGCAGCAGGCGCTGCTCGCGCGCATCACACCCACCGCCAGCGCGGCCGACCTGGCAGGCTGCGACCTCATCATCGAAGCCGTGTTCGAAAGCCGCGACCTCAAGGCCCAGGTCACGCGTGAGGCCGAGTCGCAACTCTCGCCCGGCGGGTTCTTTGCCAGCAACACCTCCACCCTGCCCATCAGCGGCCTGGCCACCGCCAGCAGCAAGCCCGAGAAGTTTGTCGGCATCCATTTCTTCAGCCCCGTGGACAAGATGAAGCTGGTGGAGATCATCCGCGGCAAACAGACGGACGACGAAACCGTGGCCCGCGCCTTCGACTACGTGCAGGCCCTGGGCAAGGTACCCATCGTGGTCAACGACTCACGCGGCTTCTACACCAGCCGCACCTTCGGCACCTTTGTGATGGAAGGCGCCGCCATGCTGGGCGAAGGCATCCCCGCCGCCGCCATTGAAAACGCCGCCATGCAGGCTCGGCCTGCCCGTAGGCCCCCTGGCCGTGCTGGACGAAACCGCGCTGACCTTGAGCGTGCATGTGCTGGAGCAGACCCGCGCCGACTACGCCGCCGAGGGCAAGACCTACACCGCCACCCCCGGCGAGCTGCTGGTGGAGCGCATGGTCAAAGAGCTAAAGCGCCCCGGCCGCGCCGGTGGCGGCGGCTTTTACGACTACCCCGCAGGCGCCAAGAAGCACCTGTGGCCGGAGCTGAAGGGCCTGTTCGAAAAGCCCGGCGTGGAATGGAGCGTGCAGGAGATCCAGGACCGCCTTCTCTACCGCCAGGCCATCGAGACCGCGCGCTGCCTCGCCGAGGGCGTGTTGACCAGCGTGCATGA

Transcript

HOLI00580.g30148.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DAP5	Fatty acid oxidation complex subunit alpha OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=fadB PE=3 SV=1
A8GYG0	Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=fadB PE=3 SV=1
A6WQ25	Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) OX=402882 GN=fadJ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR018376 all species →	Conserved_site	Enoyl-CoA hydratase/isomerase, conserved site	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR050136 all species →	Family	Fatty acid oxidation complex subunit alpha	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612 all species →	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01782	fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase	EC:1.1.1.35 EC:4.2.1.17 EC:5.1.2.3	Caprolactam degradation	ko00930	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.