Gene detail

Detailed information of HOLI00580.G30173 in Hydra oligactis

Genomic Location: HOLI00580:397613...398371
NR annotation: WP_108617116.1, amino acid ABC transporter permease [Acidovorax sp. HMWF029]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AER4	Glutamate/aspartate import permease protein GltJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=gltJ PE=3 SV=1
P0AER3	Glutamate/aspartate import permease protein GltJ OS=Escherichia coli (strain K12) OX=83333 GN=gltJ PE=1 SV=1
P45767	Putative amino-acid ABC transporter permease protein YhdX OS=Escherichia coli (strain K12) OX=83333 GN=yhdX PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0216768 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00528 all species →	BPD_transp_1	Binding-protein-dependent transport system inner membrane component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000515 all species →	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR010065 all species →	Domain	Amino acid ABC transporter, permease protein, 3-TM domain	Interproscan
IPR035906 all species →	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR043429 all species →	Family	ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30614 all species →	MEMBRANE COMPONENT OF AMINO ACID ABC TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0043190 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10003	gltJ, aatQ; glutamate/aspartate transport system permease protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.