Gene detail

Detailed information of HOLI00580.G30174 in Hydra oligactis

Genomic Location: HOLI00580:398448...398909
NR annotation: WP_116002734.1, MULTISPECIES: amino acid ABC transporter permease [unclassified Simplicispira]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AER7	Glutamate/aspartate import permease protein GltK OS=Escherichia coli O157:H7 OX=83334 GN=gltK PE=3 SV=1
P0AER6	Glutamate/aspartate import permease protein GltK OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=gltK PE=3 SV=1
P0AER5	Glutamate/aspartate import permease protein GltK OS=Escherichia coli (strain K12) OX=83333 GN=gltK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0092338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00528 all species →	BPD_transp_1	Binding-protein-dependent transport system inner membrane component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035906 all species →	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR010065 all species →	Domain	Amino acid ABC transporter, permease protein, 3-TM domain	Interproscan
IPR000515 all species →	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR043429 all species →	Family	ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30614 all species →	MEMBRANE COMPONENT OF AMINO ACID ABC TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0043190 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00580.G30174.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.