Genomic Location: HOLI00592:130637...130885
NR annotation: SUB63531.1, IS2 transposase TnpB [Plesiomonas shigelloides]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00592.g58777.t1 |
| Transcript |
| HOLI00592.g58777.t1 |
| Protein |
| HOLI00592.G58777 |
| UniProt accession | Description |
|---|---|
| P24577 | Insertion element IS407 uncharacterized 31.7 kDa protein OS=Burkholderia multivorans (strain ATCC 17616 / 249) OX=395019 GN=Bmul_4719 PE=4 SV=2 |
| P25438 | Insertion element IS476 uncharacterized 39.2 kDa protein OS=Xanthomonas euvesicatoria OX=456327 PE=4 SV=1 |
| P17984 | Insertion element ISR1 uncharacterized 17 kDa protein A2 OS=Rhizobium sp. OX=391 PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0016715 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13683 all species → | rve_3 | Integrase core domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001584 all species → | Domain | Integrase, catalytic core | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47515 all species → | LOW CALCIUM RESPONSE LOCUS PROTEIN T | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
HOLI00592.G58777.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
