Genomic Location: HOLI00643:6187...7687
NR annotation: WP_252657982.1, LysR substrate-binding domain-containing protein [Acidovorax kalamii]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00643.g15770.t1 |
| Transcript |
| HOLI00643.g15770.t1 |
| Protein |
| HOLI00643.G15770 |
| UniProt accession | Description |
|---|---|
| Q08597 | Nitrogen assimilation regulatory protein nac OS=Klebsiella aerogenes OX=548 GN=nac PE=3 SV=1 |
| Q47005 | Nitrogen assimilation regulatory protein nac OS=Escherichia coli (strain K12) OX=83333 GN=nac PE=3 SV=1 |
| P16931 | HTH-type transcriptional regulator DgdR OS=Burkholderia cepacia OX=292 GN=dgdR PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012547 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00126 all species → | HTH_1 | Bacterial regulatory helix-turn-helix protein, lysR family | Domain | Interproscan |
| PF13609 all species → | Porin_4 | Gram-negative porin | Domain | Interproscan |
| PF03466 all species → | LysR_substrate | LysR substrate binding domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR000847 all species → | Domain | Transcription regulator HTH, LysR | Interproscan |
| IPR033900 all species → | Domain | Porin domain, Gram-negative type | Interproscan |
| IPR005119 all species → | Domain | LysR, substrate-binding | Interproscan |
| IPR023614 all species → | Homologous_superfamily | Porin domain superfamily | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30293 all species → | TRANSCRIPTIONAL REGULATORY PROTEIN NAC-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:2000142 all species → | Biological Process | regulation of DNA-templated transcription initiation | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0015288 all species → | Molecular Function | porin activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
HOLI00643.G15770.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
