Detailed information of HOLI01051.G37005 in Hydra oligactis

Genomic Location: HOLI01051:82650...83801
NR annotation: WP_137749249.1, class III extradiol dioxygenase subunit beta [Acidovorax sp. NB1]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P22636Protocatechuate 4,5-dioxygenase beta chain OS=Sphingobium sp. (strain NBRC 103272 / SYK-6) OX=627192 GN=ligB PE=1 SV=1
Q88JX5Gallate dioxygenase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=galA PE=1 SV=1
Q762H52,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase OS=Rhodococcus rhodochrous OX=1829 GN=mhpB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0043086 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02900
all species →		LigBCatalytic LigB subunit of aromatic ring-opening dioxygenaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR034937
all species →		FamilyProtocatechuate 4,5-dioxygenase beta chainInterproscan
IPR004183
all species →		DomainExtradiol ring-cleavage dioxygenase, class III enzyme, subunit BInterproscan

 PANTHER
No PANTHER signature was detected for HOLI01051.G37005. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0018579
all species →		Molecular Functionprotocatechuate 4,5-dioxygenase activityInterproscan
GO:0006725
all species →		Biological Processobsolete cellular aromatic compound metabolic processInterproscan
GO:0008198
all species →		Molecular Functionferrous iron bindingInterproscan
GO:0016491
all species →		Molecular Functionoxidoreductase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04101ligB; protocatechuate 4,5-dioxygenase, beta chainEC:1.13.11.8
Polycyclic aromatic hydrocarbon degradationko00624deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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