Gene detail

Detailed information of HOLI01063.G47887 in Hydra oligactis

Genomic Location: HOLI01063:197945...238507
NR annotation: XP_047138603.1, protein PTHB1 isoform X1 [Hydra vulgaris]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI01063.g47887.t1

ATGACTAACTATTATATGATTTGGTGGTTTCAAAGAAAAATTCTACTTTTTCCTGCAGTAGCTTTATGCTGTTTATTCATAGTATTATATACATTATGTCAATCTGGTGATTCTAATACATCAATAAAGTTTACTGTTCAGGAAATAGAATCTTTAAAAAAGCAGATAAATGTATTTGAACAAAAGTTAAAAAAAAAGGAACTTAAGACAATATATTTAGTGACTCCAACACACCATAGATTAACACAACAAGCTGATTTAGTTCGAATGTCAAACACTTTAAAGTTGGTTGATAATATTCATTGGATAGTTATAGAGGATAGCAAAAAAAGAACTGAGTTGGTGACAGATATTCTTAAAACTTCTAGAATAAAGTACACTCAACTACATGTTTCCACTTCAACTAATCTAGTCAGATTAAATAATGATCCACGCTGGAAAAGGCATAGAGGTGTTGATCAGCGTAATTTAGGTTTAAAGTGGTTACGTGAAAACATAACAAGTCAGATAAATGATGGAGTTGTTTACTTTGCTGATGATGATAACACTTATCACGAGAACTTATTTGTTGAAATGAGAAACACTAAAAAGATTTCTATGTGGCCTGTTGCATTAGTTGGAGGATTACATTGGGAAGGCCCTGTATGTGAAAATGGCAAAGTTGTAAGCTTTTACACTGCTTGGGAACCTAATCGTATGTTTCCCGTTGATATGGCAGCATTTGCTATAAACTTAGATTTAATATTAGTGAATAAGGATGTTTATATCAATCCAGATGTTAAAAGAGGTTATTTAGAAACAGATTTTTTAGAAAGACTAGGAATAACTAAAGATGAAATTGAAGCAAAAGCTGAGGATTGTCGAAAGATTTTAGTATGGCACACACAAACATCTGAGCCTAACATGAAAAATGAAATAAAGTTGCAAAATTTAGGCCAAGCTCGAGAATGGTGTAGTACTTGTTGTGGGGGGATTGAAGAAGAATTTGATCAAGGAAGCTTGTGCTTGGCTAACATTGACAACAATCCAAATTGTTTGGATAAAGTTATAGTTGGATCTTTAAATGGCGTAATTCGCATTTTCACAGCTGAAAAAGGCGGTTTTAAAGCAAGTAATTTAATGCTGGAAACTCAACTTGGATATCCAATAATTCAGATTGAAGCTGGTAGATTTGTTTCTGGCAGTGAAAAAATGCAACTTGCTGTGCTGCATCCAAGAAGTCTAAGTGTTTATGCTGTATCTAGTGTAGTTGGATTTGTTGAGCAAAGTCAATTTTTTTCTACCAAGTTAATATACGAGCATCGATTGGAGCATATTTCATCAAGTATGGCGCATGGATCCTTTGGTGGTGTAAAAGACAAAGACTTTATCTCTTTTCTTCCTGATTTTCTCTTACCTGGGCCATTTGTTTACATTAGTTCAAGAGATTCATTTGTGTTTGGTGCCAGTGATAGAAGCTTGCAATGTTACAAATATGGTACATTGGCATCATCATCTGTCAGTGACAAAAATACGAAAAAGATTTTACCTGATTGGTCGCGAATGTTGGGAGAGCATCTAGTTTCAATACAATTTTCTGGCGGATCCATTGAAGTGCTAGGAGAGAGGTCTCTTTTCACTATTAATATATCAGGAGAAATTGTGCATATGAAGAAGTTAGAGTATTCTCCCAATTGCTTTTTATCCTATAGTAAACCAAGCAGCTCAGATAAGAAGATAAGTTTAATTTGTACTTATTCCTCTATGCTGCTTGTTTATGAAGATCATGTTTTAATTTGGGCTGCACAACTACCACATGATTCAGTTTCTTGTAAGATTGGAAATTTTGATGGTTTACAGGGAGTGATTGTAACTCTCAATGAACATGGTTACATTTTCTGCTCATACTTAGGAACCACCCCTTCTTTATTCACTATACCAAAAGCAGCTGAACGAGAAAATAATTTTGACGGTTTGGACAAGGAATTAAAAGATTTAAATAAATTTATTCAAGCTTTTGAAAGTGGAACAGATCTCTCAACTGTTGTAAAAGAACCTTTGTCGATAAGTGTTGTGCTACCTGATCGATTAGATGAGGATTCGAAATCGCAAGAGCTAATCGACAATGATGGCGAGCATCCATTACCCACACTTACTATTGAGATTGTTCTGGAATGGAAAAGTGTCAAGCCAGTTGAAAATATTACACTATGTTGCTCTTCAAAACATCCTATTGTTTGTTCACAGCCACAAATTTCTATACCAATTTTAGGTAGCAAATGTGTACTTAATGTATTTTTTTGTACATTGGCAAGCTCTTTGCCATCTGATCTTGATGTTTCCATCACAGCTAGCTACTTAACGGATTCTGATGCTCCACGAGTTGTTCAAATGTCATTCGAACTTCCTCTTGATTTAATTGCAATTGGTTGTCCGCCATTAAAAACAGGGTTGAGTAAGTTGGTGATAGAAGTCAATAAAGATACAGTTAATTTAGGAGAGATTTTTCCAGACATGGTTGTGGACGTTGTTATACCAATAAGTGGACTTGGTATTCAGTACTATGGTGGCCCAACTGTAACTTTAATCGCTTCTAAACAGACAAGCCGCTATCGTTTACAAAGTGATTCATTCGAAGCGATGTGGCTTGTTCTAAAAACGTTACTTAGAAGATTAGAGCTTTTCTACCAAAAAGATTTAAGTGGTGTACCATTTCGTTGCACTTTCCAAGGACCAATACCCCATCAAGAGTATTTTCTCTTGATTGACAAACATTTTGAACTGCGACTGGCTTTAAATTTATATTTAAAATTGCTCTCACAAAGGGCTCATCAATTTCGCGTTATCCAGAAAAGACTTCTTATGAGGTTTAAAGACAAAACTCCCGCCCCCTTAGCTCATCTTGATACTCTACTTGATGGAACCTATAAACAGTTGCTTGCTCTTGGAGAGCAGATTGAAAACACTCAGTTAGCTTTATTACAAGCTAGTACAGCATTATCAAGCGGAACAAGACTAATCAATTTACTGATAAAGTTTTACGTATCGATGTCTGACAACGATTTTTCAATTCTCCAAAATATCCTTTCTCCTAACGTGTCGGATAATTCAACTCAAGGCTGGGAAGAAATGATTGACGTCAATATATGCTACATGATAAAAACATGTCTCTCGAAGGGTTCAAAAGATCAAAATTTGGTACTTCCACCTATGAAGATGGATAAAGACACCAGCAAGTTAAAAAAACACTTATCTTTGTTATGGGAGCGACTGGGTAAAGGAACTAAACTAAATCTTGTTGCCTCGACGGAATAA

Transcript

HOLI01063.g47887.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q811G0	Protein PTHB1 OS=Mus musculus OX=10090 GN=Bbs9 PE=1 SV=2
Q6AX60	Protein PTHB1 OS=Xenopus laevis OX=8355 GN=bbs9 PE=2 SV=1
Q3SYG4	Protein PTHB1 OS=Homo sapiens OX=9606 GN=BBS9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14727 all species →	PHTB1_N	PTHB1 N-terminus	Repeat	Interproscan
PF14728 all species →	PHTB1_C	PTHB1 C-terminus	Family	Interproscan
PF03360 all species →	Glyco_transf_43	Glycosyltransferase family 43	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026511 all species →	Family	Parathyroid hormone-responsive B1	Interproscan
IPR028073 all species →	Domain	PTHB1, N-terminal domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR028074 all species →	Domain	PTHB1, C-terminal domain	Interproscan
IPR005027 all species →	Family	Glycosyl transferase, family 43	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20991 all species →	PARATHYROID HORMONE-RESPONSIVE B1 GENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0015018 all species →	Molecular Function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI01063.G47887.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.