Gene detail

Detailed information of HOLI01084.G16618 in Hydra oligactis

Genomic Location: HOLI01084:1...71202
NR annotation: XP_047137067.1, uncharacterized protein LOC101234890 [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI01084.g16618.t1

ATGAAGTTTTTACAAAAGTTTAAACATAAGTCCACTGACAATCAAGATGTTCTTGTAATCAATCAACTTTATAACTTACTTCAAAATCATGGTGATGATATTTTGTCTGGCAAAACTAAATTGAGTCTAACAGCTCCTGTTTTAATCTTGCTTAATAGTTTGTTTCAAAAACTTAACGAAGGTATCAATCAACCAGAATTTCAGTTCGTTTCTTTAAAATTGTTACCAGGTAGTGTCAACTCAAGTTATCCTGTTTTAGATGTTTGTCATTTTAAGTTAGTTGAAATTCTTGAGATATGTAAACTTCCGATATCCAGTATAAAGAACTTGAATTTAATACGTCGCCAGCTTAAGTCACTTACTTGTTTTAAAGCAGCAGATAGCATTCACAATGTTATCTGCCAGTTCGATTCTTCTGCGAATCTTCTTCAAATTCCATTCTTGACAGAATTAGATCTTAGTTGCAATAAAATCACAAGTATAAATGATGATGCAATGAAATTGCTTCCTGCTTTAAAGAAACTCAATCTTAGTTACAATAATTTACAAGTTGCAAACTCAGAGGCGCTGCCAATCCTTAGTCATCTTGATCTAAGCTTCAACACTCTTATTAGTATCCCTGTATTTTCTGAAAATGTGTCAGAGAACTTAACACATTTATACCTTAAAAATAACAATCTATGCAGATTGAAGGGTGTTCAACAGTTCATTTTTTTAAAAGAGTTGGACGTCTCATTTAACTGTCTGCTTGAATTCAATGAACTAGTGCATATATCTTATTTAGAAAAGTTGGTCACTGTAAGTTTAAAAGGCAATCCTATTTCATTTGACGCAAGATACAGAGCTACTGTTATTCGAAATTTATCCCCTGTTCGGAGAAGATGTCTGATCTGTTTGGATGGAGTTAAACTAGACTTAGATGAATTAAGTACTCTTGGCAAAGATGTAAAGCCAATGCCGCTTTTACCCCCATGTTTTCCTGAAGCTCAAGAATCTCCAAATAAGATAAGTCATAAAGTTCGAAATGCAAGTATTAAAGATTTCAACCCTATCTTCTCTAAAATACAAAGTTTTGACTCTGCATCAACATCATCATCAACTTCTGCTGAATCTTCTGGTGTTATCAACATAAAGAAAGAGGAAGAGGAAAGGCGAAAAGTGATAACTTATTCAAGCAGAAAATATTCTTCAAACAACTCAGTTAGTTGGACTAACAGTTTAGCAGAACAGAAAAACAATTTAGCAGAACAGATATCTAATAGTGAAGAGCCTAAGATTAAATATGTAACAGAAACTATTGAGAAGGAAATATTATCTGAAGATTTGTCAAGCTCAAAGATTGTTGAAGATGGGATTTATGGAGATGAGCCAATGATGGGTTTGTCGACTATTGATTTTAAATTAAATAGACAAGATGAAAATAACGCTTTTACTCCTTTGGACTTGAACGATAAGGAAACTATTGAGTTTGAGTCCGAATTTGCCTATTTGGTTAAGAACGTAATTTTAAAACTATCAACACCAGCGACACCGGACTCAACGCCAGATGTAGACTTGTGTGATGATTTTGAATATTTGTTTATTTATTTTCAACATACTTATCTTATTGAAAAATGTGATAAAGGAGTTTTTCGTACCAGATTAGACTTGAACTATCTTTCAAAAGTTGATTCCATTCCAGAAACACTAACCGCAAAGATGTCATTTGATCTTTTACGAGTTGATTGGCAGTACAGAGAGTATGTGTTTGAACATATTGATCATCTAGATGCTTTTGTGCAGTATGTTCGCGACATTTGCAGTGAGAAATTTTCAAAAGAAAATTGCAGATATGTTCCACTGCGAGGTAACGCTTCTAAAGTACAATGCTTAAAATGTGGTGTGTCATTTTTGACAAAAAAAAGAAGTGATAACTGCAATGAGTGTGGAAGTTCTATGGTTATTGAAGTTGATAACAATGAAAGATTAGAATATTCTAGTCAGAGCAAAGTTGAAGATACTACTTATAATAATTCTACTATAGATCATAATGCTACTGCAGAGCAAAAAATTTATCATTCTTATCTTTCTCAGTCACTTCCCTGTTGTAAACAACTTGAAGAAAATTTTGTTGCATTGCGTTATTCCGTCTCATACCCATCTTTTTCAAATAAAAACAACAATAATGAGTTTAATAGTCATCAAAACACAGTACTTTCTTCTCAAGAGGTTTCCATGGAAGAAACGTTATCTGAATCAAAATTAAGTTCAACCACAGAGCAAGATTCATTATACATGGATAATATTGTTAGATGTGATCACAGACTGAAGTTATTCTTGTCTATAAATGTTTATAAGCACGCAGATGAAGAATTTGTTTGTCAGCTAAGATGTGATTGCGTCTTAAATACAAAATCAGAAATTTTTGATTGTTTTTTTCATGTCAGCAGCACATCTATTTATGTTTTTGCAGTTCTTGATAAAAGAAGCTTATCTCCAGAGAAGTCATTAAGAAAAGTTTTATCTTGTGATTTACCAAAAGTTATGTTAGTAGCTCCATGCTACAACTATCAGAGTTTTATAGTTGAACTTTCAAAGCCTTCTTTAAGATTGAAGTTTTTGACAGGAGATAGCCACAAGACATTTAATCTACTGGCTAACCTAGAAGTTGAATTTTCTAAAGTTCCATCTCCAACTATTTTCTCACTTGTTTGTCATCCTAGAACAGCTGTTAATATCAGGTTTCAAATATTCGGTCTTGAAGAAAGTCTGTTAGAGAAGGCTGACCGGTTATACACCCAGTTGTCATTGTATTCCATGCCTCAAATTTTACAAACTCGAAAGTACCACTTGCGAACTTACCATAATTGTTTTATTGCTTATGAGTTTTTGGACTGGCTTTGTCTTTATAAAGAAGCTCCAAGCCGTAAAGATGCACTATCACTTTGCAATGAATTATTGCACGATGGTCATATTATTCATATATCAAAACAAACTGTTTTTAAAGATGATTCAGATTGGTATCAGTTCACTCAGTTTATAGACGAATCTACGAGCTCTATGCAGCCTTCTAAATCGAATGATCTTCTTAATTTCTATTGCGTTTCTGATGGAATAAATGAAGATATAAAGATATACATGTTTGCTGATGTTATCTTGAAAAGTGACAAATCTACTCCTCTGCGCCAGACTGTTTTGTGTACGCCATCACATATTTTTGTGGTTAAAGAATGCCATGTTTGGCCTCTTCCTCGAACTTTTCTACCTACTGCTGTTAATAACGACCAGTTTGTTAAAACAGCTTGCATGAGAATTACTGACATTGTTTCATTGGAAATGTATGATGATACACCTTGTCAACTTTTAATTAAATTTAGTGATGAG

Transcript

HOLI01084.g16618.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N1F8	Serine/threonine-protein kinase 11-interacting protein OS=Homo sapiens OX=9606 GN=STK11IP PE=1 SV=4
Q3TAA7	Serine/threonine-protein kinase 11-interacting protein OS=Mus musculus OX=10090 GN=Stk11ip PE=1 SV=1
Q6IRN0	Serine/threonine-protein kinase 11-interacting protein OS=Xenopus laevis OX=8355 GN=stk11ip PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003172 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF15904 all species →	LIP1	LKB1 serine/threonine kinase interacting protein 1	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR031782 all species →	Domain	LKB1 serine/threonine kinase interacting protein 1, N-terminal	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15454 all species →	NISCHARIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI01084.G16618.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.