Detailed information of HOLI01298.G14956 in Hydra oligactis

Genomic Location: HOLI01298:57297...58661
NR annotation: WP_051685929.1, diguanylate cyclase [Pararheinheimera texasensis]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9I310Bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase MucR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=mucR PE=1 SV=1
A0A0H2Z7X0Diguanylate cyclase TpbB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=tpbB PE=1 SV=1
Q9I4L5Diguanylate cyclase TpbB OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=tpbB PE=1 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07695
all species →		7TMR-DISM_7TM7TM diverse intracellular signallingDomainInterproscan
PF07696
all species →		7TMR-DISMED27TMR-DISM extracellular 2DomainInterproscan
PF00990
all species →		GGDEFDiguanylate cyclase, GGDEF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000160
all species →		DomainGGDEF domainInterproscan
IPR011623
all species →		Domain7TM-DISM receptor, extracellular domain, type 1Interproscan
IPR011622
all species →		Domain7TM-DISM receptor, extracellular domain, type 2Interproscan
IPR052163
all species →		FamilyDiguanylate Cyclase/Regulatory ProteinInterproscan
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR029787
all species →		Homologous_superfamilyNucleotide cyclaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46663
all species →		DIGUANYLATE CYCLASE DGCT-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for HOLI01298.G14956 in Hydra oligactis.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI01298.G14956.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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