Gene detail

Detailed information of HOLI01423.G1501 in Hydra oligactis

Genomic Location: HOLI01423:140435...140716
NR annotation: WP_005795932.1, MULTISPECIES: 30S ribosomal protein S18 [Comamonadaceae]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1WGK3	Small ribosomal subunit protein bS18 OS=Verminephrobacter eiseniae (strain EF01-2) OX=391735 GN=rpsR PE=3 SV=1
A1TLI3	Small ribosomal subunit protein bS18 OS=Paracidovorax citrulli (strain AAC00-1) OX=397945 GN=rpsR PE=3 SV=1
B9MDJ3	Small ribosomal subunit protein bS18 OS=Acidovorax ebreus (strain TPSY) OX=535289 GN=rpsR PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0051335 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01084 all species →	Ribosomal_S18	Ribosomal protein S18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001648 all species →	Family	Small ribosomal subunit protein bS18	Interproscan
IPR036870 all species →	Homologous_superfamily	Small ribosomal subunit protein bS18 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13479 all species →	30S RIBOSOMAL PROTEIN S18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0070181 all species →	Molecular Function	small ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02963	RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.