Genomic Location: HOLI01529:162815...163785
NR annotation: MBI3559162.1, RecX family transcriptional regulator [Candidatus Gottesmanbacteria bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI01529.g35418.t1 |
| Transcript |
| HOLI01529.g35418.t1 |
| Protein |
| HOLI01529.G35418 |
| UniProt accession | Description |
|---|---|
| Q182L1 | Regulatory protein RecX OS=Clostridioides difficile (strain 630) OX=272563 GN=recX PE=3 SV=1 |
| Q65MA3 | Regulatory protein RecX OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=recX PE=3 SV=1 |
| A7Z2L7 | Regulatory protein RecX OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 GN=recX PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02631 all species → | RecX | RecX family | Family | Interproscan |
| PF12072 all species → | RNase_Y_N | RNase Y N-terminal region | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR003783 all species → | Family | Regulatory protein RecX | Interproscan |
| IPR022711 all species → | Domain | Ribonuclease Y, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33602 all species → | REGULATORY PROTEIN RECX FAMILY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006282 all species → | Biological Process | regulation of DNA repair | Interproscan |
HOLI01529.G35418.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
