Detailed information of HOLI01894.G34444 in Hydra oligactis

Genomic Location: HOLI01894:139915...190194
NR annotation: XP_012561004.1, KRR1 small subunit processome component homolog [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B4G9L6KRR1 small subunit processome component homolog OS=Drosophila persimilis OX=7234 GN=dbe PE=3 SV=1
Q3B7L9KRR1 small subunit processome component homolog OS=Bos taurus OX=9913 GN=KRR1 PE=2 SV=2
Q8BGA5KRR1 small subunit processome component homolog OS=Mus musculus OX=10090 GN=Krr1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005426 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17903
all species →		KH_8Krr1 KH1 domainDomainInterproscan
PF21800
all species →		KRR1-like_KH2KRR1 small subunit processome component, second KH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024166
all species →		FamilyRibosomal RNA assembly KRR1Interproscan
IPR048550
all species →		DomainKRR1 small subunit processome component, first KH domain, eukaryotesInterproscan
IPR036612
all species →		Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR041174
all species →		DomainKRR1 small subunit processome component, first KH domainInterproscan
IPR048549
all species →		DomainKRR1 small subunit processome component, second KH domain, eukaryotesInterproscan
IPR048548
all species →		DomainKRR1 small subunit processome component, second KH domainInterproscan
IPR004087
all species →		DomainK Homology domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12581
all species →		HIV-1 REV BINDING PROTEIN 2, 3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0032040
all species →		Cellular Componentsmall-subunit processomeInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI01894.G34444.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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