Detailed information of HOLI01898.G31398 in Hydra oligactis

Genomic Location: HOLI01898:173853...181695
NR annotation: XP_012555299.2, DNA ligase 3 isoform X2 [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A7H0DNE6DNA ligase OS=Monkeypox virus OX=10244 GN=OPG180 PE=2 SV=1
O57250DNA ligase OS=Vaccinia virus (strain Ankara) OX=126794 GN=OPG180 PE=2 SV=1
P0DOO3DNA ligase OS=Variola virus (isolate Human/India/Ind3/1967) OX=587200 GN=OPG180 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003047 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04675
all species →		DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036599
all species →		Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR050191
all species →		FamilyATP-dependent DNA ligaseInterproscan
IPR012308
all species →		DomainDNA ligase, ATP-dependent, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45674
all species →		DNA LIGASE 1/3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003910
all species →		Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006310
all species →		Biological ProcessDNA recombinationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006266
all species →		Biological ProcessDNA ligationInterproscan
GO:0006273
all species →		Biological Processlagging strand elongationInterproscan
GO:0006288
all species →		Biological Processbase-excision repair, DNA ligationInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0070421
all species →		Cellular ComponentDNA ligase III-XRCC1 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI01898.G31398.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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