Gene detail

Detailed information of HOLI01902.G48042 in Hydra oligactis

Genomic Location: HOLI01902:103322...136081
NR annotation: XP_012553517.2, protein KIBRA isoform X1 [Hydra vulgaris]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI01902.g48042.t1

ATGGAAACATCGTTTCGAGAAAATCGAAAAAACACACAAGATAAATTAGATGCAAATGTTATATTACAAAGAGTCATGCCATTACCAAATTACTGGGAAGAAGCATATACACAAGATGGAAAACCATATTATATAGATCATTTAAACGAGTGTACCACATGGATTGATCCACGTGACAAGCTAATCAAACCAATCACTTTTGCTGATTGCATTGGCTCTGAACTGCCACTAGGATGGGAAGAGTGTAAAGATGAAGTTATTGGAACTTATTATGTTAATCATTGTTCAGAACAAAATCAATACGAAGACCCTCGTCATCAGTGGCAGAAAAAACAAGAGGATATGCTGAAGAAATATTTAAAACACATTAAAAAAGATCTGCAGATAAAATATTTAAGGAAGTTTAAATCGTTTAAAAACGTTGACGAAATGGAGCCATTTTTGAAGTATAATTCGACGCAACTTAAAGAAGATATACAAACAGCAAGGGATAGGGTTAATGATCTTAAGAAGGAATTACATGAAACCACTGAACAAAATGACCTCAATAATTTTGAAGAGATCAACAAGAAAATATCTTCAAACAGCCCACTTCAAATTCATGCTATAAAAGAGAAACTAAGCGAAATGAAAGATATGCGCGAGAAGCTTTTAACAGGACAGCAAGAAAAAATTAAAATTCTGCAAGAGTTGCTTCAACAACGGGACGAGTATCAGATGAGTGAATACTCGAGTTCTAGTGGTCAGAAAAAGTTTGGATCTGCTACAAGTTTAAACAGCGCTGGTAGCGGCAACCTTCCCCTCTATTCTGGCATAGAAGAAAACACTTCTGTTAATAAACGACGACTTAGAAAGGACTATCAGCGAGCTTTACAACGGATGAGTGAACTTTATGCTCAACTGGAAATCATCGATTATAGTCTGCAGCTGTCTGAAAATGGACCACAACAGAGAAGATTTATGTTATGTGCTGAGAAAGAAGCACTACTTTTAGAGATCAAACGCTTTGAAATTTATATTCGCACTGAGGAAGACAGAATCCAGTTAGAAGAGGAAAAGGAGTTACTTATGCGTGACTTGGTCTCCGCTAGGCAGTTCTCCTCCAAAGTCATTGATGATAGAATGCAGTTGGAAAACGAACGTAAGTTACTGAAGAGGCAATTAGCTGAAAAAACTAGACAAACAAATCTTTTGGAACTGAAACTCAAAAGTCTCTCAGCCAGTACTTTATCAGTTTCATCTACATCAAGTCGAGGATCCGCATCAACTGGAACTAGAAGTTCCCGAGGGTCATTAAACTCTTTGAGTCACCAGGTTGAGTTAACAAGTGATAATCCTGGTAATATGTATCATTTATCAACGTTTTGTGCGCCTATTTATGAATCTCGCGTATTAGCCAGCCAAGCGGAGACAACCGATGGTTTAAACAATACATGCTGCTCTCCTTGCAACTCTAGAATTTTTCATTCATTGCCTGGATCACCATTTACTCGTTTTAATGATATGCACAACATCAACAGTGAGGATGACATTAGAATTTCAAATGATACGTCCTACATGAGTTATTCAAATTTACCAATAAACAGTTACCAATACACAATGGGTACAGCGGTTGTGTCGAATGCTATTTCCGACGAATCAGTCGCAGCCGATAGCGGCGTATTTGACGGTCCAATTGAACGCAATACGGTCTCGCGTCAAAATAGCGACCATTCTAGTGGAGTTTTTTGTAGCGATGAGCATATGGAAACAGCGCAAATTTGCGTAGGGTTAGAGTATGAAGACGATAAATTAATTATTTCTATCGAAAAAGGAAGACATTTTCGTGCGCTTTATTTCAAAAAATATAAATATGTTTTTGTTCGAGGTCGTCTACTACCAAGTAATAATTTGCTACAATTTCGTACGACTAGATCAATTGTCTCCGACGAACAAAACTTTCACGAACAATTCTCTTTCAAAATAGATCGAACAAAGTTATCAAACAAGACATTGCAGTTGGACTTATGTGGAAACTTAGATGGCATTGTCACCGAAGAATGTCTAGGTGGAGTGCAAATCAGTTTGGCAGACTTCGATTCTAACCAATGTATTGTAATGAAATGGTATAATTTACTTAGCTCGTCTTTTATGAAAGAAGAAATAAATTTGGATCGATCGGTTTCATCAGTTTCATTAGAAAGTGTACAGCATCGTTTGAATGGATTACCACATAAGGCGGCTGATACTAGTTTTATTGCATATAATCCTTACTTAACTAGGTCGAACTCCTGGCAAGAAAGTTTGCTAGATAAAAAATCTTTACAACGTTCAGTTGATAGATTACCTCTATCTCGCCTCCTCATCCATTCGCGTTCTTTGTCAGAAGAACAGGAGCGCCACGCTCAAGATTCAAACTTTCGTAGTAGCGTATCTGATTGTACAGATACTCGTTGTAAACATCCTTTCGAAAGAATGGGTATAGGCCGTTGCAGTGTACGTCATAATAAATTACCTCAAAAAAGTTTATCCTTTAAAGTAAACTCGCCAAAATTATCGAGGAATGTTCTTTGTGATAAGCCTTTTATGACATCTATTGATCTTGAGTTAGAAATACAAGAGGCTTATTTAAAACAGGAAAAATTGAATGAAGAAATAACTCGTTTAAAAGAAATCCATAATCTAATAGCAGAAAATAAATTGGAGGGGCGAGATGAACTGCCTCAGTGGCTTGTAGAAAACGGGGAAAATTTCAATGTTTTGTTAGACGAGGCACAAAAAGAGGTATCTTCAAATCTTTCTAATCATTTCAGTTTTATTGATCAAACGCAACATTTTAAAGACACGGAGAAAGCCTTCGATATGATTCGCATGGTCCCAATAAATGGCAACGCCAATATAAGGTCCAACGCTGTGAAAACATTACCAATAGAGAAACCTGAGATACATTGGGTTTAA

Transcript

HOLI01902.g48042.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AWC2	Protein WWC2 OS=Homo sapiens OX=9606 GN=WWC2 PE=1 SV=2
Q6DJR2	Protein WWC2 OS=Xenopus tropicalis OX=8364 GN=wwc2 PE=2 SV=1
Q5SXA9	Protein KIBRA OS=Mus musculus OX=10090 GN=Wwc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005390 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR051105 all species →	Family	WWC/KIBRA Hippo Pathway Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14791 all species →	BOMB/KIRA PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan
GO:0035330 all species →	Biological Process	regulation of hippo signaling	Interproscan
GO:0046621 all species →	Biological Process	negative regulation of organ growth	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI01902.G48042.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.