Genomic Location: HOLI01937:103923...104758
NR annotation: WP_164852353.1, siderophore-interacting protein [Rheinheimera riviphila]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI01937.g38264.t1 |
| Transcript |
| HOLI01937.g38264.t1 |
| Protein |
| HOLI01937.G38264 |
| UniProt accession | Description |
|---|---|
| A5F660 | Ferric vibriobactin reductase ViuB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=viuB PE=1 SV=1 |
| P0C6Q2 | Ferric vibriobactin reductase ViuB OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=viuB PE=3 SV=1 |
| V5XKC3 | Ferric vulnibactin reductase VuuB OS=Vibrio vulnificus OX=672 GN=vuuB PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08021 all species → | FAD_binding_9 | Siderophore-interacting FAD-binding domain | Domain | Interproscan |
| PF04954 all species → | SIP | Siderophore-interacting protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039374 all species → | Family | Siderophore-interacting protein | Interproscan |
| IPR017938 all species → | Homologous_superfamily | Riboflavin synthase-like beta-barrel | Interproscan |
| IPR013113 all species → | Domain | FAD-binding 9, siderophore-interacting | Interproscan |
| IPR007037 all species → | Domain | Siderophore-interacting protein, C-terminal domain | Interproscan |
| IPR017927 all species → | Domain | FAD-binding domain, ferredoxin reductase-type | Interproscan |
| IPR039261 all species → | Homologous_superfamily | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30157 all species → | FERRIC REDUCTASE, NADPH-DEPENDENT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0010106 all species → | Biological Process | cellular response to iron ion starvation | Interproscan |
| GO:0015891 all species → | Biological Process | siderophore transport | Interproscan |
| GO:0033212 all species → | Biological Process | iron import into cell | Interproscan |
| GO:0052851 all species → | Molecular Function | ferric-chelate reductase (NADPH) activity | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
HOLI01937.G38264.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
