Gene detail

Detailed information of HOLI02887.G732 in Hydra oligactis

Genomic Location: HOLI02887:60535...119826
NR annotation: XP_047131506.1, methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI02887.g732.t1

ATGTCATTCAGTCGATTACTGCACTGGGGTCCTATAACAACTTTGTTCATTATTTCGTCATTGTTTTTTATCTCCATTCTAACACTTTTAATATGGCAGTATCCAACTGATGTTGTAGGGAAAATAAATTTTATCTTACTATTTTTCTGGTTGTTCAGCGTTCTGCGAAACTTTCTCAATGCAGTTTGGCTAGGACCAGGATACCTTCCTTTTAAATGGAAACCGAATGTGGACAGCGACATTCAATTCCTTCAGTTTTGTGATGTTTGCCATAGTTACAAAGCACCTCGTGTTCATCACTGTAAAACATGCTCGAGGTGTTCTATGAAGATGGATCATCATTGTCCTTGGATAAACAACTGTGTTGGCCATTACAACCATAAATCTTTTATACTTTTCCTAATATTTGCAATTTTAAGTTGCTTGCATGTTACTATCATTATAGCATTTTGTATCTATAGCAACTTATTATGGAGACATGGGCGTATTTTTATAACTAATGATCAAAGTGCTTTGGTACAAATGAGTCACTTTATAATGCTTGTTTTGTTCTTTGGTTTTGGAATGTCGCTTAGTGTTTTTTTATCCGTTTCTTTTTTATTGTATTTTCAGGTGCTAATTGTTATTCGAAATCAAACAGGAATAGAGGCTTGGATAGTGGAGAAGGCTGAAAGTCGCAACAGAGAAGACAAGTTTGTTTATCCTTATGATCTCGGTTGGCTAAAAAATTTTAAACAAGTTTTTACGTGGTCTTCTTATTATATAGGTGATGGCATTGATTGGCCAGTTCGTGAAGGTTGCAGTAAATATGCACTTACTATTGAGCAGCTTGCTCAGAAAGAAATAAAGAAAGCAAATGCAGTTGATTATGTTGCGTGTTCTGTTTATTCTGGATATCGTTTTCCTATAACCTTAGGTCTGAAGACATGCTTTGACAGTCCTTGGAGTGCGGATTCTAGAATTCCATTAAATATAGGCGATGAATTTCTTGTAACTCGGTGGAGAAAACATTGGGTGTTCGGAGAAAAGTTAAAAAGGGCTACTGAATTAAAGCAACAACAACTAAACTCTAATAAAACTGTTCACGAAACTAAAGGCTGGGTTCCACGTTGCTGTTTGAAAGATATATATGAAAAAAAAACTAAAATTTTAATCTTTTTACTTAATAATATCTTGCAACTATTTCATGGTCGTATGAGTCAAAATAAAAATAAAAGACGAGCAAATATGATACAATTATCAAAGTTCAAAAGGTCTTCGTACTTGGGTTATTTATATCAATGTGTATCTGTTTCATCAAAAGCGGTCTCAAGAGCAGATGCTGTTACCCCAATACGAAAAGTATTAGTTGCTAACAGAGGTGAGATAGCATGCCGTGTGATTCGCACTGCAAAAAAGATGGGTATACGTAGTGTTGCATGCTACAGTGATGCAGATGCAGATTCTATGCATGTTGAATTGGCAGATGAAGCTTATTACATTGGTGGCTCCGCAGCTGCAGATAGTTATTTGAACATGGACAAAATAATTAATGTTGCTAAAAAGTCTGGCGCTCAGGCAATTCATCCTGGTTATGGATTCTTGTCTGAAAAGCCGGAGTTTGCTAATCTTTGTGAAAAAAATGAAGTTATTTTTATTGGGCCACCATCATCTGCCATTCGTGATATGGGAATCAAAAGTACATCAAAAGAAATAATGGGTTCAGCTGGTGTACCTTTAATTAAAGGTTACCATGGTGATAATCAATCAAATGATTATTTAAAAGAACAAGCTCTGCAAATTGGGTATCCTGTTATGCTGAAAGCAGTACGAGGGGGTGGTGGTAAGGGGATGCGTATTGTTACAAGTCCGTCAGATTTTGAAGCCTCATTGCAATCTGCTCGAAATGAATCTCTCAAAGCATTTGGTGATTCTAATATGCTTATTGAACAATATATAAAAAAACCAAGACATGTCGAAGTTCAAGTATTTGCTGATAAGTATGGGAACACTGTGTATCTCTTTGAAAGAGATTGCAGTGTTCAAAGAAGACATCAAAAAATTATAGAAGAAGCACCTGCTCCTCATATGTCACAAGAAATTCGTAAAAAGCTTGGAGATGCAGCTGTCAGAGCAGCTAAAGCTGTCGGTTATGTTGGAGCAGGAACAGTTGAGTTTATTTTTGATGAAAAAGGCGACTTTTTTTTTATGGAAATGAACACTCGTTTACAGGTGGAACATCCTGTAACCGAAATGATATCTGGTGTTGATTTAGTAGAATTACAGATTCGTGCTGCTGCTGGCGAGGTTCTTCCATTTACACAAGATGATCTTTTACTTAATGGGCATTCATTTGAAGCACGCATATATGCTGAAGACCCTGAAAGTAATTTCATCCCTGGAACTGGGTTACTGAAGTATCTGTCTACTCCAAAGGAAGAATCCACAGTTAGAGTTGAAACAGGGGTTAGACAAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTATTTTATTTTTAGGTGATGAAGTTGATTCATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTTGATTTATTTTTAGGTGATGAAGTGAGCCAATTTTATGATCCTATGATTGCCAAGTTAGTTGTTTGGGACAAAGATAGAACATCTGCGTTGCTAAAGCTTACTAACAAATTGCAAGAGTACCATGTATGA

Transcript

HOLI02887.g732.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99MR8	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Mccc1 PE=1 SV=2
Q5I0C3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mccc1 PE=1 SV=1
Q96RQ3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=MCCC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF01529 all species →	DHHC	DHHC palmitoyltransferase	Family	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR050856 all species →	Family	Biotin-dependent Carboxylase Complex	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR001594 all species →	Domain	Palmitoyltransferase, DHHC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18866 all species →	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004485 all species →	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016409 all species →	Molecular Function	palmitoyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI02887.G732.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.