Gene detail

Detailed information of HOLI03082.G33403 in Hydra oligactis

Genomic Location: HOLI03082:6125...40759
NR annotation: XP_047143304.1, TOM1-like protein 2 [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZVM7	TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2 PE=1 SV=1
Q5SRX1	TOM1-like protein 2 OS=Mus musculus OX=10090 GN=Tom1l2 PE=1 SV=1
O60784	Target of Myb1 membrane trafficking protein OS=Homo sapiens OX=9606 GN=TOM1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005364 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03127 all species →	GAT	GAT domain	Domain	Interproscan
PF00790 all species →	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002014 all species →	Domain	VHS domain	Interproscan
IPR004152 all species →	Domain	GAT domain	Interproscan
IPR038425 all species →	Homologous_superfamily	GAT domain superfamily	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR014645 all species →	Family	Target of Myb protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13856 all species →	VHS DOMAIN CONTAINING PROTEIN FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI03082.G33403.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.