Gene detail

Detailed information of HOLI03089.G29378 in Hydra oligactis

Genomic Location: HOLI03089:22007...110490
NR annotation: XP_047137952.1, serine/threonine-protein phosphatase 4 regulatory subunit 4 isoform X4 [Hydra vulgaris]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI03089.g29378.t1

ATGGACCAGGTAAACTTGATGGACAATAGACAACATTACAAGCTTCATCCCATTCTTGAACTTACTTACACAGTTCGGCACGCAGCTGAGCAGGCTCAGGAGGAGTGGGTTCACTTACAGCAGCAGTGTTTTCTCCCTACTTCCACGGGGGCTGCTACAGTTCAAATGCAAAACGTACATACGCTGCAGCTTCATTCCGAAAATGGGATCAATTCTATCGGACAGCATTCTTCGATTAATTACACGCATTGCCTCGACAAGAGTACGAACAATTCATTTGTATTAAATGACTCTAACGAAAACGTTCACGCGCTTCAAAACGGACTAAATCACGCAGATGCTCTTGAAAACCATTTTGATAATATTTCATTTATTATGGGTTATCAAAAAGTAAACCCAACATGGCAAATGAAGCATGGCTTGAATAGTGAAGTCCATGCCAAAGCAAAGTTTACTTCAATGTTTAAAAAGAATCATTCATATTGTACATTTACTGATCCTGGAATTTTAATTCTAAAACAATATCCTATTTCTTGCAGTCCTGACCTAGAAACAAAAGAAGAAATAGAAAGATTGACTGTTGATGAGAATTTAAAGCCAACCCAGCGTGTTATTTATATTTTAAAAAATGGCCAGGATGTTCAAAAAATTAGTACTATTAATTCACTGGATGTAATCTTAAAAGATGAGCCCCCAGATTGCTACAAAGATATTTTCCCTCTTATAAAAGATGCTTTAAACATTAGATCGCGAGAAATTCAGATAGCTGGGGCTACTGTTTTATGTAGATTGCTTAAAAAACATTTGTTGGACAGCAAAAAGTTTTTTACAATTTTTTTAGACCATGTATTAACAGAATTATTAGCTTGGGATATAGATGTATGTGATGCTTGGCTGGAAACTATAATATATATACTAAACCTTCTCAAGCAGCAAAATGATCATAGCTTACCTATTTTGGAAAGTAAGCTTGTAGATTTTCTTATGAAAAACTGCTCTTTAAATCAGTCCACTGCAATTCGAAAAGTATGCTGCAAAATTGTAGGTTCATTAGCTGGTGTAGTCAGTAAAAAAAGACTGGTATCTGATCTTATGCCTAAACTAAAATCTTTATGCCAAGATATTGACTTAGATGTTCGTGCTAGGATGTGCCTTGAGCTTGGAACTTTAATACATATTTTAGAAAATGATTTATCAAAGCAACACCTCTTCCCTGAATTATATATGTTGATAGATGATGAGGAAGCCACTGTTAGACAAGCAGCATTTGCAACAATTACAAATCTCCTAACAATTTTGCATAAAGATTTATTGGATTCATTGAAAAAAATTGTTTTAAAGTTTCTTGTAAAGGTGTTAGTGAGAAAACATGGAGATGAATTAATTTCAGTTGCTGAGCTTTTTGGAAGAACATTTACAGCTTTATCAGGTTTCCTAACTGAAGAAGAAAGATATTCATTATTGAATTGTTACCAAATGTTGTGTTTCCATGGAAATAATCCAAGTATAGTTCCTATAACAACAAGTCCTAATTTAGTTATGAATGAAATCATTCCACTTGAAATGGAAGATAAAAGAGCACAATTACGGTACTGGTGTGCTGTTAATTTGCCGGTGGTATTGTCTTGTGGTAACAATAATGCATTTCAAGCAACTCTTCTTCCTTGTTTAATTTCTCTGTCAAAGGATCCATCAGTCATAGTGAGAAGAGCAACAGCAATGTCGCTGTACGAGATTGCAAAACATTTATCCGAACATGCTCATCTGATGCATACATGTATTGCATATGTAATTAAAGATTTAAATATTCATGTATTGGATGGTTTTCTATTAATTATGCCGTCAATATTTGAAGCTCTCCAAACTTCAGGGGGTAAAAATTTTATACCAGAGTTAATACCACAACTACTTGAATCGGAAGATCGGATATCATCTTCTCTTCATTGGAGGATATATGAGCACTACTTTGAAGCTATTAGTTGCTTGCATTATTATCAAACAACAGATCAGATAATGACAAAGATTGTTCCAAATCTTCTTAAAATTTTAACTTCAAATAAAGTGCGTCCTGTCATTTTAGCCGCAGGTCATTGTCTTTTAACCCTTTTAAAACATAATGGGAATATCAGAGACAGAGAAGAAATTTGTGAGAAGTTGATTAGTTTGCTAGCTCGTTCAGAACATTGCAAATATCGTATACTTTTTATGAACTTATATCCCTACATTGCTGAATTATTTTCAAGGAGATTTTTCAAATGCATGTTTTATGATGTTGCAATGCAAATGGCTTTGGACCCTATTATAAATGTCCGTTTGAAGTTTTGCACAACATTGCCACTTTTAAAATCTTTAATTCGTTTACCATTGGATAGAATGTTATTGCAAACATTAGATTTAACTGTAAGAAGAATTGTGGCATTAGAAAATGATAAAGATGTGTTAGACGCAATAAAGAGTGTAATTCAAGAATTAGACAATGTACGAGTGTGCTTAGATCTGGCTAACCCTAATGAAGATGACATAGAAGATCTTGAGAAAGAAAAGTTTGAAGATATTGTTACAGAAGAATTTCAAATTGAACGAAAATCTCGCACAGTTTCGTTGGGCACTAAGGATTCTGTCAAAAAAGTTATATCCAAAGGCATGAGAAGTAGCTCCTCCGTTGTACTTACGCGTAAAACAGGTGTTAAAGACAAGGAGGCTAAGGTAGTAGTAGCACCAACCAGTGTGAAAACATATTCGAAAAAAAGTTCCGTATCGTCATCGTCAGCGGCATCATCTTCAAAAAAATAA

Transcript

HOLI03089.g29378.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C0Y0	Serine/threonine-protein phosphatase 4 regulatory subunit 4 OS=Mus musculus OX=10090 GN=Ppp4r4 PE=1 SV=2
Q6NUP7	Serine/threonine-protein phosphatase 4 regulatory subunit 4 OS=Homo sapiens OX=9606 GN=PPP4R4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005558 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039918 all species →	Family	Serine/threonine-protein phosphatase 4 regulatory subunit 4	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21467 all species →	PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008287 all species →	Cellular Component	protein serine/threonine phosphatase complex	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan
GO:0032515 all species →	Biological Process	obsolete negative regulation of phosphoprotein phosphatase activity	Interproscan
GO:0080163 all species →	Biological Process	obsolete regulation of protein serine/threonine phosphatase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15426	PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.