Detailed information of HOLI03211.G33758 in Hydra oligactis

Genomic Location: HOLI03211:25141...32259
NR annotation: XP_012554643.1, E3 ubiquitin-protein ligase BRE1A [Hydra vulgaris]
Species abbreviation HOLIG · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5DTM8E3 ubiquitin-protein ligase BRE1A OS=Mus musculus OX=10090 GN=Rnf20 PE=1 SV=2
A2VDP1E3 ubiquitin-protein ligase BRE1A OS=Bos taurus OX=9913 GN=RNF20 PE=2 SV=1
Q5VTR2E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens OX=9606 GN=RNF20 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005469 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097
all species →		zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018957
all species →		DomainZinc finger, C3HC4 RING-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013956
all species →		FamilyE3 ubiquitin ligase Bre1Interproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23163
all species →		RING FINGER PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0033503
all species →		Cellular ComponentHULC complexInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071894
all species →		Biological Processobsolete histone H2B conserved C-terminal lysine ubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI03211.G33758.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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