Genomic Location: HOLI03250:17300...17548
NR annotation: WP_116958269.1, methyl-accepting chemotaxis protein [Hydrogenophaga borbori]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI03250.g1006.t1 |
| Transcript |
| HOLI03250.g1006.t1 |
| Protein |
| HOLI03250.G1006 |
| UniProt accession | Description |
|---|---|
| Q9I6V6 | Methyl-accepting chemotaxis protein McpB OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=mcpB PE=1 SV=1 |
| P21823 | Methyl-accepting chemotaxis aspartate transducer OS=Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56) OX=1028307 GN=tas PE=3 SV=2 |
| P05704 | Methyl-accepting chemotaxis protein III OS=Escherichia coli (strain K12) OX=83333 GN=trg PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012240 (this species only) · gene tree & orthology |
HOLI03250.G1006 in Hydra oligactis.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051310 all species → | Family | Methyl-accepting chemotaxis | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43531 all species → | PROTEIN ICFG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004888 all species → | Molecular Function | transmembrane signaling receptor activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006935 all species → | Biological Process | chemotaxis | Interproscan |
HOLI03250.G1006.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
