Gene detail

Detailed information of HOLI03399.G11140 in Hydra oligactis

Genomic Location: HOLI03399:1...32434
NR annotation: XP_002156538.2, protein ERGIC-53 [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D0F3	Protein ERGIC-53 OS=Mus musculus OX=10090 GN=Lman1 PE=1 SV=1
Q62902	Protein ERGIC-53 OS=Rattus norvegicus OX=10116 GN=Lman1 PE=1 SV=1
Q9TU32	Protein ERGIC-53 OS=Chlorocebus aethiops OX=9534 GN=LMAN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03388 all species →	Lectin_leg-like	Legume-like lectin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005052 all species →	Domain	Legume-like lectin	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR051136 all species →	Family	Intracellular Lectin and Glycoprotein Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12223 all species →	VESICULAR MANNOSE-BINDING LECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005537 all species →	Molecular Function	D-mannose binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005793 all species →	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI03399.G11140.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.