Gene detail

Detailed information of HOLI03482.G16488 in Hydra oligactis

Genomic Location: HOLI03482:41804...86092
NR annotation: XP_047135598.1, cytoskeleton-associated protein 5 [Hydra vulgaris]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI03482.g16488.t1

ATGGGCGATGACGATGACTGGCAAAAACTATCTATTGAAGATAAAGTTAGTCACAAGTTGTGGAAAGCTCGCCTTGCTGGCTATGAAGAAGCTGCTAAAAGGTTTCGCTTAATTGACAGTGATAAAAGTCCAGAGTATCTCAATTTTTTAGGAAGTATTAAAAATTTTGTTACTGATTCCAATGCAGCAGCTCAAGAAAAAGGATTGGAAGCTGCACTCTCGTTTGTTGAAAATGCAGCTTGTGCATCAAAATGCTGTTCAGATGTTGTCACAGGTATAATTTCAAAAGTATTGACAGCTAGACCAAAGTCTAAACAGTTAGGAGTTGATATTTTGCTTATGTTTATTGAAGTCGAAAAACAAGATGTGGTGATGGAGGAGCTTGTAAATGGGTTTTCCCAAAAAAATCCGAAAGTTATTTCTGCTTGCATATCAACTTCTTGTCAGGCATTACGAGAGTTTGGAGGTAAAGTTATTATGATGAAGGGTCTTGTCAAACTTATTCCAACTTTGCTCAGCCATAGTGACCAAGGAGTTCGAACAGAGACTAAAGAGCTTGCTATTGAAATCTTTAAATGGATTCGAGATGCAATTAAACCACAGCTGTCAAATATTAAACCAGTTCAGCTTAAAGAGCTTGAAGATGAGTGGCAAAAACTTGAAGCTGTGCCACCAGTACCAACAAGGTTTACACGATCTGAACAAGCAAAGCGTGCTGCTGCTCCTCCTCCAACTATAGCTGTTGCAGGAAAAGTTGATGAAAAGGGTGTTGCTCCACAAGCTGCTGCTGTTTTTATTGACCCTTGGGAAATGTTTGATCCAGTTGATATCTTGAGTCAAATGCCTAAAGATTTTTATGAGCAAGTTGAAAGTAAAAAATGGCAGGAGCGTAAAGAGACATTAGAAGCATTTGAGAAACTTGCATCTACTCCGAAAATTGAAGCTGGTCAATATGGAGAAGTATGCGCGGTTTTAAAAAAGGTGATTACCAAAGACAGCAATGTTGTGGTTGTGGCCATTGCAGCAAACTGTGTCACTGGTCTTGCAAAAGGCTTGAGAAAGAAATTTCAAACATACTCTGGTCTTTTGATTCCAGCAATTCTTGGAAAATTTAAAGAAAAAAAATTAAATGTAGTTATTGCATTAAGAGATGCATTAGATGCGGTTTTTGCTACGACAAACTATACTAATATAATGGAGGATCTGCTTGCATCATTGGATAATAAAAATCCGCAAATTAAAGAGGAAACTTGCAGGTTTATAACAAGAACATGCTCTACTTCTAATGTTGCAGCTTTTCCAAAAAGCGTTTTAAAATTAGTAGCTCCTGCACTAGTTCTTAGATTAGATGATACAGTTGGTTCTGTTCGTGATACAGCAGCTGAATCTCTTGGCACTATCATGAAGTTAGTTGGAGAACGTGCAATGGCAGCCTATCTGGATGCCATAGATAAATTAAAGCAAGAAAAAGTGAAAGAGTATTTTGAAAAAGCAATTTTAACGCCTAGCGCTGGAGGTGGAGCTCCTGTTAGTGCTGGAGGTGAAAGTTCAACAACTGCTGCTGCGCAACCTGCACCTCCATCTTCTAAACCAGGTCCTTCTAAACCTGTAGCTAAAAATGTACAGCAAAAGGAAGAAGAAAAAAAACCAGTAAGCAATGCTCCACCTAATAAAGTTGTAAAACCAAAGTCAGGTGGAGCAGCAACAAAGTCAGGAGGAAAAAAGGTTGTAGACCAGAAGAAGAAAAAGAAAAAAGGAAATGATTTTGAGGAAGATCTTAAAGAGCTAACAGAACCAGAATTGCCTGAAGGTATTGTTGAATCACAAGCAGAAGGTCTTTTTGGTGAAGAATGTATTAAACAAATGGCAAGTAATAATTGGAAAGAACGTCTTGCTGCAGTGGAAGAAATGACCAAGAAAATTGAAGGAATGGAAGATAAATCTTTTCCTAGTCAAGTGGTTGTTCGAACACTTGCTAAAAACCCTGGGTGGAAAGATAGTAATTTTCAGGTCATGAATGTTAAGTTCAAGTTGCTAGCAATAGTAGCAAAAAAATCAGACTTTACACGAAGAAGTGCTTGGTATGCAATTGCAGGTCTTATTTCAAAAATAGGAGATGCAAAGCTTAAAACCCAAGTGAGCGAAACGTTAAAAACTTTTTCTGAGAATATATCCCTAAACTACATTAGTTTGAAGATTTCTGCTGCTGCAGAGGAAGCTAAAAATCCAAAACTGCAATCAGAGGCATTAGTTTGGATGAGTGAGGCTGTTAGAGAGTTTGGTTTTAGAATTGATTTAAAACCCCATATTGCATTTATCAAAACATCATTAGCTAATACTAATCCAGCAGTTCGAAAAGCCGCCATTGAATTTCTAGCAACACTGCACCTTTATGTTGGGCCTAATGTTCGGGTATTTTTTGAGGATGAGAAAGCAGCATTGTTGCAGCAAATTGATGAAGAGTTTTCCAAAAATAAAGATCTAAAACCTCCCACACCTATTCGCAAATTTGTTGACGATGAAGAGGAGGATAAAGACGTTGGCGAAGATAACCAACAAGAAAATGAAGAACCTGGTGCTGCGGTGGTAAATTTAGAAGATATGGTTGAGAGAGTCAATATAAGTGGTAAAATAACAGATGAAGTATTGGCCAAGATTAGTGATAAAAATTGGAAAATTCGAAAAGAAGGATTAGACGAGGTTCAAGGATTTATTAATGAATCAAAATTTATTACTCCAGATATTAATGAACTTCCGACTTCGATTAAAGCTCGCCTTGCTGATAACAACAAAGTGCTAGTTCAATTAACTATAAGTATCTGTAAACAACTTGCTGAATGCGGTGGTAGTGGAATGGTTAGGCACAAAGCAACAATCCTCCCAGCACTGATTGGAACGTTCACAGATGCTAAGCCAGCTTTGCGTAATCTAGCAGAAGAGGCTCTTGATGCATGGCACAGTAAAATTGGATTTTTACCATTCTTAGATGGTGAAATACTTTCTACAGCACTTCAAGTCCAAAATCCAAACTTAAGAGCTACAGTAACTACTCAGTTGGCTAGAAAAAAGTTACCTAAGGAGAAAAAGTTACCCCCAGAGTTTAAAGATAGCATATTTCCCTTGTATGTCTGTCTTGAGGATAGAAATCCAGATGTTCGAAAAGCAGCTCAAGCTGTTGTTCCTCTCTTCATGGCTCATGTTGGATTTGACGCAATGTGCAAAGCTACAGCTAAGCTTGATACTGCATCCAAATCTGTTGTTCAAGCAATTATTGATAAGGCTCGGGAAACTTGTGTTCCAATAGCTGCTCCTGGTAAAAAGGCTGCTGATTCTGGAAACAAACAAGCTGCAAGTGCACCACATCCAATTAAATCATCTGCTGGACCTTCTAAAGTTTCTTCTGATAAGTCTGACATTGATTTAGCATCTGTAAAGTCATCTAAAGAAGTACCAAAAAAAACTAAAGACGAAAAACCAGTTAAAACTGATACTAAAAAGAGCGCACCTCCGAAAGCTAGCAGTGGTGTTGGTGGGCGTAAAAAGGATTTTGTTGAAGACGATGGACCAGCGATAATACTAAAAGTTGGTAAAGCTCAACGAATCAAAGACGAAAAAGCTCTTAAAGTTTTAAAATGGAACTTTACTGTACCACGTGATGAATTTCTTGATCAATTAAAAGAACAAATGTTGCCTTGCTTCAGTGCATCTATGCATACAAAGCTTTTTCATAAAGATTTTAAATTTCACATTGAAGCACTTACAATACTCACTACTTGTGTTACTGAATATTCCGAGGCAATGCTGGAATCTTTGGATTTGATTCTCAAATGGGTTTCTCTTAGGTTTTTTGATACCAACACATCAGTTTTGCTAAAAGCCTTAGAGTTTTTAACTGTGCTGTTTAACTTTATGGATAGCAACAAGCAAAAGTTAAATAACTTTGAGGCATCTGCATTTATCCCATATTTAGTCGGAAAAATTGGTGATCCCAAAGACAATGTTCGGAAATCTGTACACGATCTTTGTAAACTGGTTACAAACATATACCCTGCAAGTCAGATGTTTGTGTATCTGATGCAAGGTCTCGAGTCAAAAAACTCTAAGTCAAGAATGGAATGTTGTGAAGAATTAGGATTTCTAATCAGTAAATTTGGAATAGAAGTTTGTCAACCGAATCCAAAAGTTCTCAAAGATATTGCTGTTCAGATTGCTGACAGGGACAACGGTGTTCGATCTGCTGCACTTAATTGTATTGTAGAAGCTTACAATATTGTGGGAGAACAAGTTTATAAACTCATAGGAAGGCTGGCAGATAAGGAAATGGGTTATTTAGAAGAGAGAATCAAAAGAACGGGTAATAAGAAAGAACCTCCTCCTAAGCAGTTGGCTAATGTAAAACCTAGACAGCCATCAAAATCTACTGAAGATTCTACAGATTCTAATGAACCAGGACTTCAAGTAAAACAAGATTCCGAATTAAATAAGCCTGCACCCACTATCAGAGCTAATGTTCCTCCTTCTCCACAAATTAAGAGAGAGTTTGAATTGGATCTGCGATCTATCGAGGGTGATGAAGGAATTATTACAGCGAATATACCACAGTTAAAGAAAGTTAATTTAGATGATATAACCCAAGCTGCAAATATACCCGATAATCTTCTGAAGGCTTATAGTAGTACCAAAAGCTCTTCAACGAATGCTTCAACTGCGAAAGATGTAGGAGAATTGCTAGATCTGACTATTGCTAAAATTTCATCTTCTGATGCCCAAGCTGCAATGAAATCATTAGTGCAACTTGAAGATGTATTTAGAAAGAAAAAAACTGATAATGAAATAGTCAAAAGAGTTGATCAGTACCTTGTTACTTCATTGGTGCAAATGAAAATGTTGTTTTCTCGACATGTGCAAAACTCCAAAGAAAATAGCGAAGAACACGAAAGACTCTTAAAATTACTTTTAAGTGGAATGTTATCGCTATTCGATGCTCAATGTTATGCTGGTGTAGTATCATACAATGTACTTAAAGATGTCATATTATATTTTATTTCTGTACTTAATGACAAACTTTTAATGAACTTCCAAGAACCAGATCTTTCTATTCAGTGTGTTAATAGGTTACTGTTGCGAGTGATTACTAATTCTAATAAAACATCGTGTTTATGTAGCTGCATTAAACTACTGCAAGATATGTCAGAAAATGAAAATACTTCAACATCCCTTATAAAACTAGTCATGAAGTGTATATGGAAGCTCACCCATCTTCTACCTGACTTTATAAATGAAGTTCGTCTTCCTGCAGTTTTACTTAGTATACATACTTTTTACAGTGTTTTGCCCCCCTCACTTTGGCGTATTCGTACAGACCGTGTTCCCCAGCAAACAGTAAAAGCATTATTGCAAACTTTATGTAAGCTTCGTGGACCCGAGCTTTATGACAGTATAAATACTCTTGAAAACAAAAACGCAAGTGAAGTGCCATTATATATAATGAAACACTGTTCTAAAGGAACACTAGATGGAACTGATAGCAATCGTCCACCACCAATAAGGTTCACTCAGCCTTCAAATGAAGTTCTGGTTGAAATATTTAAAAAAATAGGTTCAAAAGAGAATTCTAGAGCAGGTATACTTGAACTCCATTACTTTAAACAGCAGTACCCAGATTATGATGTAAACCCATATATAAAAAATACTTCTCCATTTTTCCAAAATTTTATTGACCGTTCACTAAAAACCATTGCTACAGAAGAAAAACTAAAGCTAATTAATAACAGAGAGAATTCATCTCAATCTGTATTCAGTTCTTCCCACACTACTTCAGGTTCAGGTTTGTTTATCAAATAA

Transcript

HOLI03482.g16488.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14008	Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5 PE=1 SV=3
A2AGT5	Cytoskeleton-associated protein 5 OS=Mus musculus OX=10090 GN=Ckap5 PE=1 SV=1
Q9PT63	Cytoskeleton-associated protein 5-A OS=Xenopus laevis OX=8355 GN=ckap5-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002782 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21040 all species →	CEP104-like_TOG	Centrosomal protein CEP104-like, TOG domain	Repeat	Interproscan
PF21041 all species →	XMAP215_CLASP_TOG	XMAP215/Dis1/CLASP, TOG domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR045110 all species →	Family	XMAP215	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR048491 all species →	Domain	XMAP215/Dis1/CLASP, TOG domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12609 all species →	MICROTUBULE ASSOCIATED PROTEIN XMAP215	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007051 all species →	Biological Process	spindle organization	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030951 all species →	Biological Process	establishment or maintenance of microtubule cytoskeleton polarity	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0046785 all species →	Biological Process	microtubule polymerization	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0061863 all species →	Molecular Function	microtubule plus end polymerase	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16803	CKAP5; cytoskeleton-associated protein 5	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.