Detailed information of HOLI04552.G4688 in Hydra oligactis

Genomic Location: HOLI04552:1...57672
NR annotation: XP_047136616.1, E3 ubiquitin-protein ligase SHPRH-like isoform X3 [Hydra vulgaris]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5BHD6DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rad5 PE=3 SV=1
Q4WVM1DNA repair protein rad5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=rad5 PE=3 SV=2
Q4IJ84DNA repair protein RAD5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=RAD5 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003108 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176
all species →		SNF2-rel_domSNF2-related domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000330
all species →		DomainSNF2, N-terminalInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038718
all species →		Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR052583
all species →		FamilyATP-dependent Helicase/E3 Ubiquitin LigaseInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45865
all species →		E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0140658
all species →		Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006974
all species →		Biological ProcessDNA damage responseInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI04552.G4688.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP