Gene detail

Detailed information of HOLI05983.G36092 in Hydra oligactis

Genomic Location: HOLI05983:10309...11965
NR annotation: BDT27229.1, DNA polymerase II [Bacteriovorax sp. HI3]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21189	DNA polymerase II OS=Escherichia coli (strain K12) OX=83333 GN=polB PE=1 SV=2
O29753	DNA polymerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=pol PE=3 SV=1
P95690	DNA polymerase 1 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=dpo1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001755 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104 all species →	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050240 all species →	Family	DNA polymerase type-B	Interproscan
IPR017964 all species →	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006172 all species →	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR006133 all species →	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10322 all species →	DNA POLYMERASE CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0008296 all species →	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0009432 all species →	Biological Process	SOS response	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI05983.G36092.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.