Gene detail

Detailed information of HSymV2.0_g01.01063_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_1:17855265...17865587
NR annotation: XP_047139623.1, NCK-interacting protein with SH3 domain isoform X1 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g01.01063_t1

ATGTACAAGGCGCTTTATTCACATACCAATGCTGACAAAAATGTACTCTCCTTTAAACCTGGAGATGAGTTTAATTTGATTGAACAAATTGATGAGCATTGGTGGTCGATGTTGAGCACAAATGGCATTACTGGTCTTGTGCCTGCTTCATACTTGGAAATAAATAAGATCAGTCAGAAGGATGTACTCAAATCAATAGATGAATCAATTAAACTTATTCATAACTCTCCTAATACAGTTTGGAATGAAACTGTGAGGAAAAATATACAAAAACTGATGGTTAACCGCGAAGCTATCTCATCAGGAAAGAGTTTGTGGACTAATCCAACTGCTGAAATTCCACACCAACCTAAGAGACTTGCTCCACAAGTACCTGCAAACAGTATTAAGAAAGGAAAGTCAACCAAAAGATATTCTGCACCTCTGCCACCTGGTTTTAAAGATGCCGCACCAACTTCTGATGCTTCATCAGAGGCAAACGCTAATGGTGCCAGTAGTAAGATTTATAATATACAAGTTAATAAAGGAGACATTAGTCCTCTTAATATGAAACAACCTTCGAAACGAAACAGTTCTGAGTCATCAAATGAAAGCCTAACCAGTCCCACAGGTACACATCAGGTATATTTACCATCTTCTGGTAAAAAGGATCAAGTAAATACTTCAAAGAGCACAACAACAAAAGATGTTAAGCTAAAGGTAATTGAGGGAAGTAACATAACAATCTCCAGAATGGGTGAATCAAGTTTCAAAACTATCCGATCAGATGAAAATGTAAAATCAAAACAAGTTGATAACCTGATACAAAAATCTCCAAGTACTAAAAATACAGAAAGTTTTTCTTTTGTGCCACATAACACCATATCGAGAGACTCCTTTGCGTCCAGTGACATGAGTACAATAACTTCAAAGTCTTTGTTGCAACAAGATACAGGATGCTATGTACCCGAGGATTTGGGGAAACAACTTATTGATGCTGTAAGAGGAAGGTGTAAGATGAGTTTTAATAAATCATTAGCGGCCATACGTTGTGTTCTACAAACCATTGGAAACGAAGTACCCTCAATCTCTGAACCACTAAAGAAAATTATGAAGCAAATTCAGGATGATAAGTTGAATGTGTTTCAAGGTTCTTTGGCTGAGGAAGATGCAAACCGGCTGTGCGATGTGTTGAACCAATTAACAGAACATAAAGAGGACTCCCAGCAACGAAATTGGGCCATACATGAAGATTTCTTAGTGATCAAGGAGTTGATGGAGAATTTGATGAGCATCATGGACGAAATTGATCCAAGTATATGTCGTTCTGTTTTGGAAGAAGATGAGTATCGATACATCAATGATCTAATATTATACTATCAAATGGAATCTCGTTCTAAGCTTCGTATATCTCTTCTTCATGCATTTGGATGTTTCTGTCAACTTGGTAAACAGTTTATATCACAGCTCCTTTGTTCCGTTCTACCCACTGAGCTTGCACAAGATATGCTACAAGATCAAGCTGATATTTTCAAGTTTGTGAGTTCATCCTTTCTACTAACCATGTTATTTTCTACTGGTGAACCTGTGCCATATCATCATTATGTTCAGTTTAATGAGGATTTTATTGAGTTCGTACTCAATCAAATTGAAGATCCTCCTGATGCTGACACAGAGGACGAAGTCGCAGACGGTTTGGTTGGATTGTTGTTGTCATATAATCTACATTTTAAAACAACAAGAGTAAACACTGTCATGCAAGTTATGTCAAGACGAAACGTGTTCAGAACATTGTCAGAAAAAGTGTTGTTACTGCTCAATAGGGAAAATGACCCAACTGCTTTATTTGAGTTCAACGATAGATGTCCAGATTCAGTCGTGAAATTTCTGATGGATGTCTTTGCGGATACAAAAACATCTGGAATGTTCTTCACTAACGACTTATATGTCCTCTTCGACATCATTTTGAGACAACTTACTGACAGACAAAAGAAAGATAGGGTTCGGACCGAATATCTGTCCCTGTTTCACAGTATATTGAACACAACTCATTACCATGAACACAAGCATCGTTCACAAGAATTCAAGCGATGCTTTTCAGAAATATTAAGCAACAGGGAAACAGAAAGTGAAGTGGACGTCTATATTGTTCGAGAAATTATGACACGCTTTGCACAGTCTTTTTCCTAA

Transcript

HSymV2.0_g01.01063_t1

TTTTAGGAGAACTGAGATAATATCATATTAATTTTATGCTATGTACAAGGCGCTTTATTCACATACCAATGCTGACAAAAATGTACTCTCCTTTAAACCTGGAGATGAGTTTAATTTGATTGAACAAATTGATGAGCATTGGTGGTCGATGTTGAGCACAAATGGCATTACTGGTCTTGTGCCTGCTTCATACTTGGAAATAAATAAGATCAGTCAGAAGGATGTACTCAAATCAATAGATGAATCAATTAAACTTATTCATAACTCTCCTAATACAGTTTGGAATGAAACTGTGAGGAAAAATATACAAAAACTGATGGTTAACCGCGAAGCTATCTCATCAGGAAAGAGTTTGTGGACTAATCCAACTGCTGAAATTCCACACCAACCTAAGAGACTTGCTCCACAAGTACCTGCAAACAGTATTAAGAAAGGAAAGTCAACCAAAAGATATTCTGCACCTCTGCCACCTGGTTTTAAAGATGCCGCACCAACTTCTGATGCTTCATCAGAGGCAAACGCTAATGGTGCCAGTAGTAAGATTTATAATATACAAGTTAATAAAGGAGACATTAGTCCTCTTAATATGAAACAACCTTCGAAACGAAACAGTTCTGAGTCATCAAATGAAAGCCTAACCAGTCCCACAGGTACACATCAGGTATATTTACCATCTTCTGGTAAAAAGGATCAAGTAAATACTTCAAAGAGCACAACAACAAAAGATGTTAAGCTAAAGGTAATTGAGGGAAGTAACATAACAATCTCCAGAATGGGTGAATCAAGTTTCAAAACTATCCGATCAGATGAAAATGTAAAATCAAAACAAGTTGATAACCTGATACAAAAATCTCCAAGTACTAAAAATACAGAAAGTTTTTCTTTTGTGCCACATAACACCATATCGAGAGACTCCTTTGCGTCCAGTGACATGAGTACAATAACTTCAAAGTCTTTGTTGCAACAAGATACAGGATGCTATGTACCCGAGGATTTGGGGAAACAACTTATTGATGCTGTAAGAGGAAGGTGTAAGATGAGTTTTAATAAATCATTAGCGGCCATACGTTGTGTTCTACAAACCATTGGAAACGAAGTACCCTCAATCTCTGAACCACTAAAGAAAATTATGAAGCAAATTCAGGATGATAAGTTGAATGTGTTTCAAGGTTCTTTGGCTGAGGAAGATGCAAACCGGCTGTGCGATGTGTTGAACCAATTAACAGAACATAAAGAGGACTCCCAGCAACGAAATTGGGCCATACATGAAGATTTCTTAGTGATCAAGGAGTTGATGGAGAATTTGATGAGCATCATGGACGAAATTGATCCAAGTATATGTCGTTCTGTTTTGGAAGAAGATGAGTATCGATACATCAATGATCTAATATTATACTATCAAATGGAATCTCGTTCTAAGCTTCGTATATCTCTTCTTCATGCATTTGGATGTTTCTGTCAACTTGGTAAACAGTTTATATCACAGCTCCTTTGTTCCGTTCTACCCACTGAGCTTGCACAAGATATGCTACAAGATCAAGCTGATATTTTCAAGTTTGTGAGTTCATCCTTTCTACTAACCATGTTATTTTCTACTGGTGAACCTGTGCCATATCATCATTATGTTCAGTTTAATGAGGATTTTATTGAGTTCGTACTCAATCAAATTGAAGATCCTCCTGATGCTGACACAGAGGACGAAGTCGCAGACGGTTTGGTTGGATTGTTGTTGTCATATAATCTACATTTTAAAACAACAAGAGTAAACACTGTCATGCAAGTTATGTCAAGACGAAACGTGTTCAGAACATTGTCAGAAAAAGTGTTGTTACTGCTCAATAGGGAAAATGACCCAACTGCTTTATTTGAGTTCAACGATAGATGTCCAGATTCAGTCGTGAAATTTCTGATGGATGTCTTTGCGGATACAAAAACATCTGGAATGTTCTTCACTAACGACTTATATGTCCTCTTCGACATCATTTTGAGACAACTTACTGACAGACAAAAGAAAGATAGGGTTCGGACCGAATATCTGTCCCTGTTTCACAGTATATTGAACACAACTCATTACCATGAACACAAGCATCGTTCACAAGAATTCAAGCGATGCTTTTCAGAAATATTAAGCAACAGGGAAACAGAAAGTGAAGTGGACGTCTATATTGTTCGAGAAATTATGACACGCTTTGCACAGTCTTTTTCCTAAAATTTTCTTCAAATTTTATGTTGTCTTTGGTAGCAATTCTTTATTTTGGGAACGTGTTAATACCTTTTATTTCTTTTTGTTGTGACTATATCTTTTGTATTGTGTACACATACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZQ3	NCK-interacting protein with SH3 domain OS=Homo sapiens OX=9606 GN=NCKIPSD PE=1 SV=1
Q9ESJ4	NCK-interacting protein with SH3 domain OS=Mus musculus OX=10090 GN=Nckipsd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09431 all species →	SPIN90_LRD	SPIN90/Ldb17, leucine-rich domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR030125 all species →	Family	SPIN90/Ldb17	Interproscan
IPR018556 all species →	Domain	SPIN90/Ldb17, leucine-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13357 all species →	SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0071933 all species →	Molecular Function	Arp2/3 complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g01.01063_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.