Gene detail

Detailed information of HSymV2.0_g01.01139_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_1:18777332...18788411
NR annotation: XP_012557644.1, fanconi-associated nuclease 1 isoform X2 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LWH4	Fanconi-associated nuclease 1 OS=Danio rerio OX=7955 GN=fan1 PE=2 SV=2
Q69ZT1	Fanconi-associated nuclease 1 OS=Mus musculus OX=10090 GN=Fan1 PE=2 SV=2
D2HNY3	Fanconi-associated nuclease 1 OS=Ailuropoda melanoleuca OX=9646 GN=FAN1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005089 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21170 all species →	FAN1_TPR	Fanconi-associated nuclease 1, TPR domain	Domain	Interproscan
PF08774 all species →	VRR_NUC	VRR-NUC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049126 all species →	Domain	Fanconi-associated nuclease 1-like, TPR domain	Interproscan
IPR033315 all species →	Family	Fanconi-associated nuclease 1-like	Interproscan
IPR049132 all species →	Family	Fanconi-associated nuclease 1-like, eukaryotes	Interproscan
IPR011856 all species →	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR014883 all species →	Domain	VRR-NUC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15749 all species →	FANCONI-ASSOCIATED NUCLEASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008409 all species →	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0070336 all species →	Molecular Function	flap-structured DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HSymV2.0_g01.01139_t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.