Gene detail

Detailed information of HSymV2.0_g01.01376_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_1:23607058...23617442
NR annotation: XP_047139378.1, uncharacterized protein LOC100213999 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g01.01376_t1

ATGGAAGATGATGATGAATTAACTGAAGAACTAGTATTTGCCACAGCAGCTCAAGATATAAGGAGAGTTGATCAGTTAATGGAGTGTGGTATCAGTCCTTGCAGACCTACTAGAGATGGCACCTGTCCACTTCATACAGCTGTTGTTCTTGAGTCACCAACTGGTCCTGAAATTGTATCAAGAATGTTAAACTATGGTGCAGATCCGAACGTGAAAACAGATACGGGCTTATCACCACTGCACATTGCTGCAATGTGGGGAAGAGTAGATACAATAAACTTGCTCTTAGATAATGGTGCGAATGTTGCAGATAAGGATGAAGATGACATGAGCGCACTTGATTATGCTGAAGAAGCAGAAGAAATGAAATATGAATGCCTAGATGCTTTGACACGCTTCCGACCACCCGTGAAACGTAAGAGCGGTTGTTTTATTAGTAAAAGTCGTTTTCATCTTGATAAGATTTTGGGTGGGGATGTCATGTTGTCGTCCTTTGATGCAACAGGTTTTAACATGAGTGAGACAGATTGTGCAGCACAGTTATCTTGTAGCAAAAGGAGTGCAGCTACTCAGACAGAAAGCGAGTTATTGATTGATGAATTATCACCACATAAAAACAAAGTTGACTTAAGTATTTTTAATGAGACATTATTTCAAACATGTAGTATGAATGCCAACGAAGAGTCTCTTACAGGCGAAAGCTGTGTTCAACTAGTATCATCGACACTGCTAGAAGATTCACCTAATAAATTGATCAGCATTTGTAATCTTAGTGACTCCTTGCAAGTTAGCAGAATGATGCAGCCTAGCCCAGCAGGTTATACTGCAGATGCTTCAGAAAACCCCCATTCAGAACTGCATTCTGACTTTTCTGCTGATGAAACATTTTGGAGTGTATGGAGCACTCCCCCACATCTGAAAATGTCACCTGATCAATCGCCTATTACTTTGCGTAAAAAGAAATTATACACAAAAACATCTGAAGGAAAGAACAACACGCCTCTTGCGAAGAACTCTGCAGCACGTCGCAACTCCAGATTGTTTGTTCCTGTGTCTTCACCGCTCTCCCATGATTGCTCCAATACAACGTTTAATCTAGAATGTAAACACAGAGAGTTAAAAACTAACGGTCATGTTGGTGTAGTAAGCAACAACAATAAGAACTTAAAGAAAACATTTTCTTACACTTCAGAGGAAAATGATGATAATTTATTGATAAAAAACTTTTCGAATTTGTTAAATGAAGTCTCTTTCAATGAGTCCGAGCCTTATCATGATTACCAGGAAAATAACTCCACAAAGATGGCAGCTGAAGCTACGGTGGACTATAGCAACGGCAACAAATCAGTTTCTCAACTAGTAGAGTATTATGAAAATCCACATGAAGATAAGCTTGATATAATGGAAGAAGAAAAACCGTGTTGTCATGAGTCACCAAACAAAAAATTGGACCGTTCTATTTTTGAAGTTGTTGACCTAAATGATGACACTTTTAAAGATGGCGACGACGTGACGAAGAAGAGACGTCAAAGTATGCTAGATTTCTCCGGCATAACCGTTGATTACGATTGGAAAGATGTAAGCCAAATAAATGCAACTGTGGAAGCGGAAGAATATCTTTTAAAAGTGCCAGACAATATATTAACACTATCGCCGGTGGAGTTGAGAGCGCGTTTATTGAAGTTGGGTGAAAATGTGGGTCCAATTACGCCCTCAACGAAGAGTTTGTACCAAAGACATTTGACTCGTCTCGAGAAACATGAACACAGTTCCAAGCCTGAGAGTAAATACAAAGATTACACCGCGGAAATGAGACTAGTCTTGTCAGGAACAAGCACAGTGACAAAGGCGAAAGGTGACGAACTAGAAGAGGAGATGGGTTACATATTCGATAAGCCAGAAAAACACACATGGAGGGAAGGTTCGCAGAAAACATCTTTTAACTACATCCTTCTGGATCCCCGTGTTACGAAGAATTTACCAAACAGGGCGGTGCAATTGGCGGAAGTTGATCGCTTGCGGGTTTTTTGTTCGGCCGTGTTTTATATCGGCAAAGGGAAAAGATCACGACCCTACGAACATTTTTACGACGCTGCAAAAGAAGATAAACCCGAAAAGAAGACGGTGAGTAACAAAATCAAGATGATTCGGGACATATGGGAAGCTGGATACGGTGTGGCTTCTGTCCACATATTTCACAGTGTGATTCCAGTGGAGGCCTACACAAGAGAAGCGTGCATGATCGATGCAATGGGTTTGTCTCGCCTAACCAATTTAAAATTTGGTGATTTTTACGGCCCTGCAGCGGGATGGAATTGCAAAAAACGCCGCCATCTTGGTATTCATCTTCTTACAAAGGCTATGAATATTTATCTGATCGAAGGAGAGAGACAAATCAGGAAGAAAGATTTACAGAAATGA

Transcript

HSymV2.0_g01.01376_t1

GTTTAGAGACTGTTCAGTACATACAGAAAGACAACTAACTTCATAAGATGGAAGATGATGATGAATTAACTGAAGAACTAGTATTTGCCACAGCAGCTCAAGATATAAGGAGAGTTGATCAGTTAATGGAGTGTGGTATCAGTCCTTGCAGACCTACTAGAGATGGCACCTGTCCACTTCATACAGCTGTTGTTCTTGAGTCACCAACTGGTCCTGAAATTGTATCAAGAATGTTAAACTATGGTGCAGATCCGAACGTGAAAACAGATACGGGCTTATCACCACTGCACATTGCTGCAATGTGGGGAAGAGTAGATACAATAAACTTGCTCTTAGATAATGGTGCGAATGTTGCAGATAAGGATGAAGATGACATGAGCGCACTTGATTATGCTGAAGAAGCAGAAGAAATGAAATATGAATGCCTAGATGCTTTGACACGCTTCCGACCACCCGTGAAACGTAAGAGCGGTTGTTTTATTAGTAAAAGTCGTTTTCATCTTGATAAGATTTTGGGTGGGGATGTCATGTTGTCGTCCTTTGATGCAACAGGTTTTAACATGAGTGAGACAGATTGTGCAGCACAGTTATCTTGTAGCAAAAGGAGTGCAGCTACTCAGACAGAAAGCGAGTTATTGATTGATGAATTATCACCACATAAAAACAAAGTTGACTTAAGTATTTTTAATGAGACATTATTTCAAACATGTAGTATGAATGCCAACGAAGAGTCTCTTACAGGCGAAAGCTGTGTTCAACTAGTATCATCGACACTGCTAGAAGATTCACCTAATAAATTGATCAGCATTTGTAATCTTAGTGACTCCTTGCAAGTTAGCAGAATGATGCAGCCTAGCCCAGCAGGTTATACTGCAGATGCTTCAGAAAACCCCCATTCAGAACTGCATTCTGACTTTTCTGCTGATGAAACATTTTGGAGTGTATGGAGCACTCCCCCACATCTGAAAATGTCACCTGATCAATCGCCTATTACTTTGCGTAAAAAGAAATTATACACAAAAACATCTGAAGGAAAGAACAACACGCCTCTTGCGAAGAACTCTGCAGCACGTCGCAACTCCAGATTGTTTGTTCCTGTGTCTTCACCGCTCTCCCATGATTGCTCCAATACAACGTTTAATCTAGAATGTAAACACAGAGAGTTAAAAACTAACGGTCATGTTGGTGTAGTAAGCAACAACAATAAGAACTTAAAGAAAACATTTTCTTACACTTCAGAGGAAAATGATGATAATTTATTGATAAAAAACTTTTCGAATTTGTTAAATGAAGTCTCTTTCAATGAGTCCGAGCCTTATCATGATTACCAGGAAAATAACTCCACAAAGATGGCAGCTGAAGCTACGGTGGACTATAGCAACGGCAACAAATCAGTTTCTCAACTAGTAGAGTATTATGAAAATCCACATGAAGATAAGCTTGATATAATGGAAGAAGAAAAACCGTGTTGTCATGAGTCACCAAACAAAAAATTGGACCGTTCTATTTTTGAAGTTGTTGACCTAAATGATGACACTTTTAAAGATGGCGACGACGTGACGAAGAAGAGACGTCAAAGTATGCTAGATTTCTCCGGCATAACCGTTGATTACGATTGGAAAGATGTAAGCCAAATAAATGCAACTGTGGAAGCGGAAGAATATCTTTTAAAAGTGCCAGACAATATATTAACACTATCGCCGGTGGAGTTGAGAGCGCGTTTATTGAAGTTGGGTGAAAATGTGGGTCCAATTACGCCCTCAACGAAGAGTTTGTACCAAAGACATTTGACTCGTCTCGAGAAACATGAACACAGTTCCAAGCCTGAGAGTAAATACAAAGATTACACCGCGGAAATGAGACTAGTCTTGTCAGGAACAAGCACAGTGACAAAGGCGAAAGGTGACGAACTAGAAGAGGAGATGGGTTACATATTCGATAAGCCAGAAAAACACACATGGAGGGAAGGTTCGCAGAAAACATCTTTTAACTACATCCTTCTGGATCCCCGTGTTACGAAGAATTTACCAAACAGGGCGGTGCAATTGGCGGAAGTTGATCGCTTGCGGGTTTTTTGTTCGGCCGTGTTTTATATCGGCAAAGGGAAAAGATCACGACCCTACGAACATTTTTACGACGCTGCAAAAGAAGATAAACCCGAAAAGAAGACGGTGAGTAACAAAATCAAGATGATTCGGGACATATGGGAAGCTGGATACGGTGTGGCTTCTGTCCACATATTTCACAGTGTGATTCCAGTGGAGGCCTACACAAGAGAAGCGTGCATGATCGATGCAATGGGTTTGTCTCGCCTAACCAATTTAAAATTTGGTGATTTTTACGGCCCTGCAGCGGGATGGAATTGCAAAAAACGCCGCCATCTTGGTATTCATCTTCTTACAAAGGCTATGAATATTTATCTGATCGAAGGAGAGAGACAAATCAGGAAGAAAGATTTACAGAAATGACAATAGGTAGACTTTGTGTTGTGTATTGTTTTTTATGTTTACTCAAGCCTGTTGAATTGGATTTCGTGCTTTCTCCTGCTTTTGGAGGaacagagtctagagaaagaaactttcgcgatttcgcgacttttggcgacacctaactttcgcgatttagactaaaagtcagtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NAG6	Ankyrin repeat and LEM domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKLE1 PE=1 SV=2
A8VU90	Ankyrin repeat and LEM domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ankle1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005492 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03020 all species →	LEM	LEM domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034998 all species →	Family	Ankyrin repeat and LEM domain-containing protein 1	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46427 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21411	ANKLE1, LEM3; ankyrin repeat and LEM domain-containing protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.