Gene detail

Detailed information of HSymV2.0_g01.01402_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_1:23894964...23906149
NR annotation: XP_047139710.1, centrosomal protein of 120 kDa isoform X1 [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g01.01402_t1

ATGGCTGATCACATTCTGTTAGTCCTTGGTATATCGGAAGGTAGAAGATTTCCTAAAAGACCTCATCATCAGTTGATAATTGAAGCCAACTTCAATGGTGAGGTTCTAACTACTGATGTTGTCAAACATATTGACAAACCACATTTTAACACTGAACTTGCATGGGAGATGAATAAAAAGTCTTTGCATCAACATCGTTTACAAAGAACACCAATTAAAGTTCAGGTATATGCTGTAGAGATGACGTCAACAAAAAAAGAAAGTCTTGGGTATTTTATATTGGATTTAAGAACAGCCCAACAAAATGGTGCTAAGAAGGCTTCATGGGTTTCTTTGTTGAGCTCCAAATATCAACATTTGAAACCAGAAATCAAGATTATCTTATCTGTGGAAGCTGATCAAATTAGAATCGAAGAGGAGAATAAAGATAAGGGAATACCTGTGAAAAAGAATAAGAATCAGGTCCCAAAACTGGACGAAAACAATAATATTGATGTGGTTTTGGACAATGACCAAGGCTATTATTTGATAGGTCCTGAAAGTTCTGATTGTGAAATTTTTGTTATGTCTGTTTCTATTGGTGGAGCAAAAAATTTGATACAGGTCATACCATCAGACGCCAGAATCAGTTCTGAGGATGGGTTTTATTTTTATTATTCGCTCTTTGATAATGATGTGACGAACGAAACTTTCCACGACTTGATGCATCCTGCAATGGCGACAGAACGAGCTTCTGTGCGCATATACACAACAGGACAGAGGCTTGCAGCATACTTAAGAAAAAGGAAAGTGCTTGAGGTTTATCTGTGCAGTTCTGAAAATACACTCGCGCAAGCTGTCGTTTCTCTTCAACCTCTTCTCGCCAACAATCTTGTGAAGACCCCCAGCAAAGTAGAAGGTTTGTTTCCGTTGGCGTCAACAAAGGCCTCTTTCAGTGATGCAATGGTTGGCGTTTCTATAGTACTAAGAAGAGAGGATCAAACTGCTGTGGTAGATGTGAGTCCTATAGTTGCTCCCAAACAGAACATCACACCGGTAAAAGAACCTGTGACACAAAAATTACCGTCACCGCCATTAAATCGAAATCCCCGTCCAAAATCAACCACACCTCCAACTGACACAAAAGAACGTGAACAGCCGCGATTGAGTAAGCCAGCAAAGGAGAAGGAGCATCATTATTTGTTCTCTATTGACATTAGAAGTATTTTTAACCGGAACATTCCACACTTAATCAACTGTGTTTGCAGATACACGTATCCATTCTTTGGAAGTTCATCCCCTGTCATTACAAATCCTCCTGTATTGATACAGAAAAATGCTGAAGTGCTTCTACCACAATCATTCTGCAAATTCGAATTTGCATCAACCAATCGTATTCTTCAGTCCACATTATCAAGGGTGCCTCTTATTGTTGAAGTTTGGCACAAAGATGGGAATGCGAAAGATGAGCTTCTCGGTGTGGCACAAGTTAATTTGTCTCATGTTTTTCAACCTGATAATAAGAGTGAAACTGGAGCACTTGTGAAAAGTGTAAGACTCCCGATCGTCTCCGCCCAAAATCCTGGTGAAAAAATTGGAACTGCTCACGTTGTGTTGGGGTTTGAAGACAGAGGTGAAATCATGCACAAATTGATTGCCACTCACGAACAGTCCATTACGAATAGCGATGTAACAACTGCACCAATCTCAAGCGTCGACGTTGTGGACGCACCTAGAACGACGCAAGAATACCAGGTTGCCATGGCATTGGAATTGTGGCGGGAGCAACAGGAGGAATATTTTCGATCTCAACTTGCAAATAAAGAAAAGGAACGCATGATGAAGCTGGCTGAAGAGTGGAAAATCCGAGACACGGAGCGGGAAATGATTCTTAAAAAGAAAGTCGACGAATACAACGTGCTTGAAACAAAATTAAAACGCACGCTAACTGAACTCGACGAACGAGAGAAGCAAGTAAGTCAGATGGAAACGAACTTGCAACGCAACGAACAGCTGCTCGCCGAAGAATACGAACGGAAAACAGTGGAAATGAGGGAAGCTTCGCGTCGTCTGAAGGAAGAATACCAGCACCAACTTCACCTGGAGCGACTAAAGTATACAGATCTAGAGGAGCGCTTCAGAAAAGGCGAGCAGCAGTTGAAACTTCTTGAAGAGAAAGTTAAAGGGAGGGAAAACGAAATTTACTCGTTAAAGGAAAGTCTACTAAACCGACCGGAAGTTAAATTACAGTCAGACATGAATCTGATGTTAGTTGAAAAGGTAGAACTGGAACGCAAAATTGAGTCGATCACAAAATCTAAAATTCATTATAAACAGCAATGGGGTCGAGCGTTGCGTGAGTTGGCTAGAATGAAAGTGAACGAGCAGGAAGCCGCGCAAACGAGACTAAAGAAACAACAACAGGAGTTGGAGCACATGAAGTTGAGATATCTCGCTGCCGAAGAAAGAGAGGTAATGAAAAACGAAAAAGAAGAACTCGACGATGTGAAGGAAGAAATCAATCAAAGGCTCCAACAATTGCAAGCTGCGATGACAACGGCGCAACATCAAACTCAAAATCCGCGCGAAATCGAAAATACAGAAAATTTATTTTCAAAGAATCGAATATCGAAGCTAATCGAAGAACGCGATACGTTACTTCAAACGGGAGTGTATACGATTAACGATCGTGTAATAGAAGAGATCGAGAAAGAAATTCAAAATCTCATCGATAAAGATAAATAG

Transcript

HSymV2.0_g01.01402_t1

TTTTAGTAAAGGTAAACTGATTAATCTACATAAAGAAAAGATGGCTGATCACATTCTGTTAGTCCTTGGTATATCGGAAGGTAGAAGATTTCCTAAAAGACCTCATCATCAGTTGATAATTGAAGCCAACTTCAATGGTGAGGTTCTAACTACTGATGTTGTCAAACATATTGACAAACCACATTTTAACACTGAACTTGCATGGGAGATGAATAAAAAGTCTTTGCATCAACATCGTTTACAAAGAACACCAATTAAAGTTCAGGTATATGCTGTAGAGATGACGTCAACAAAAAAAGAAAGTCTTGGGTATTTTATATTGGATTTAAGAACAGCCCAACAAAATGGTGCTAAGAAGGCTTCATGGGTTTCTTTGTTGAGCTCCAAATATCAACATTTGAAACCAGAAATCAAGATTATCTTATCTGTGGAAGCTGATCAAATTAGAATCGAAGAGGAGAATAAAGATAAGGGAATACCTGTGAAAAAGAATAAGAATCAGGTCCCAAAACTGGACGAAAACAATAATATTGATGTGGTTTTGGACAATGACCAAGGCTATTATTTGATAGGTCCTGAAAGTTCTGATTGTGAAATTTTTGTTATGTCTGTTTCTATTGGTGGAGCAAAAAATTTGATACAGGTCATACCATCAGACGCCAGAATCAGTTCTGAGGATGGGTTTTATTTTTATTATTCGCTCTTTGATAATGATGTGACGAACGAAACTTTCCACGACTTGATGCATCCTGCAATGGCGACAGAACGAGCTTCTGTGCGCATATACACAACAGGACAGAGGCTTGCAGCATACTTAAGAAAAAGGAAAGTGCTTGAGGTTTATCTGTGCAGTTCTGAAAATACACTCGCGCAAGCTGTCGTTTCTCTTCAACCTCTTCTCGCCAACAATCTTGTGAAGACCCCCAGCAAAGTAGAAGGTTTGTTTCCGTTGGCGTCAACAAAGGCCTCTTTCAGTGATGCAATGGTTGGCGTTTCTATAGTACTAAGAAGAGAGGATCAAACTGCTGTGGTAGATGTGAGTCCTATAGTTGCTCCCAAACAGAACATCACACCGGTAAAAGAACCTGTGACACAAAAATTACCGTCACCGCCATTAAATCGAAATCCCCGTCCAAAATCAACCACACCTCCAACTGACACAAAAGAACGTGAACAGCCGCGATTGAGTAAGCCAGCAAAGGAGAAGGAGCATCATTATTTGTTCTCTATTGACATTAGAAGTATTTTTAACCGGAACATTCCACACTTAATCAACTGTGTTTGCAGATACACGTATCCATTCTTTGGAAGTTCATCCCCTGTCATTACAAATCCTCCTGTATTGATACAGAAAAATGCTGAAGTGCTTCTACCACAATCATTCTGCAAATTCGAATTTGCATCAACCAATCGTATTCTTCAGTCCACATTATCAAGGGTGCCTCTTATTGTTGAAGTTTGGCACAAAGATGGGAATGCGAAAGATGAGCTTCTCGGTGTGGCACAAGTTAATTTGTCTCATGTTTTTCAACCTGATAATAAGAGTGAAACTGGAGCACTTGTGAAAAGTGTAAGACTCCCGATCGTCTCCGCCCAAAATCCTGGTGAAAAAATTGGAACTGCTCACGTTGTGTTGGGGTTTGAAGACAGAGGTGAAATCATGCACAAATTGATTGCCACTCACGAACAGTCCATTACGAATAGCGATGTAACAACTGCACCAATCTCAAGCGTCGACGTTGTGGACGCACCTAGAACGACGCAAGAATACCAGGTTGCCATGGCATTGGAATTGTGGCGGGAGCAACAGGAGGAATATTTTCGATCTCAACTTGCAAATAAAGAAAAGGAACGCATGATGAAGCTGGCTGAAGAGTGGAAAATCCGAGACACGGAGCGGGAAATGATTCTTAAAAAGAAAGTCGACGAATACAACGTGCTTGAAACAAAATTAAAACGCACGCTAACTGAACTCGACGAACGAGAGAAGCAAGTAAGTCAGATGGAAACGAACTTGCAACGCAACGAACAGCTGCTCGCCGAAGAATACGAACGGAAAACAGTGGAAATGAGGGAAGCTTCGCGTCGTCTGAAGGAAGAATACCAGCACCAACTTCACCTGGAGCGACTAAAGTATACAGATCTAGAGGAGCGCTTCAGAAAAGGCGAGCAGCAGTTGAAACTTCTTGAAGAGAAAGTTAAAGGGAGGGAAAACGAAATTTACTCGTTAAAGGAAAGTCTACTAAACCGACCGGAAGTTAAATTACAGTCAGACATGAATCTGATGTTAGTTGAAAAGGTAGAACTGGAACGCAAAATTGAGTCGATCACAAAATCTAAAATTCATTATAAACAGCAATGGGGTCGAGCGTTGCGTGAGTTGGCTAGAATGAAAGTGAACGAGCAGGAAGCCGCGCAAACGAGACTAAAGAAACAACAACAGGAGTTGGAGCACATGAAGTTGAGATATCTCGCTGCCGAAGAAAGAGAGGTAATGAAAAACGAAAAAGAAGAACTCGACGATGTGAAGGAAGAAATCAATCAAAGGCTCCAACAATTGCAAGCTGCGATGACAACGGCGCAACATCAAACTCAAAATCCGCGCGAAATCGAAAATACAGAAAATTTATTTTCAAAGAATCGAATATCGAAGCTAATCGAAGAACGCGATACGTTACTTCAAACGGGAGTGTATACGATTAACGATCGTGTAATAGAAGAGATCGAGAAAGAAATTCAAAATCTCATCGATAAAGATAAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JN62	Centrosomal protein of 120 kDa OS=Bos taurus OX=9913 GN=CEP120 PE=2 SV=2
Q8N960	Centrosomal protein of 120 kDa OS=Homo sapiens OX=9606 GN=CEP120 PE=1 SV=2
Q7TSG1	Centrosomal protein of 120 kDa OS=Mus musculus OX=10090 GN=Cep120 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005633 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF12416 all species →	DUF3668	Cep120 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039893 all species →	Family	Centrosomal protein of 120kDa-like	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR022136 all species →	Domain	Domain of unknown function DUF3668	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21574 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0022027 all species →	Biological Process	interkinetic nuclear migration	Interproscan
GO:1903724 all species →	Biological Process	positive regulation of centriole elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16459	CEP120; centrosomal protein CEP120	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.