Gene detail

Detailed information of HSymV2.0_g02.02600_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_2:1229007...1229696
NR annotation: MBQ4875249.1, 4-hydroxy-tetrahydrodipicolinate synthase [Rickettsiaceae bacterium H1]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6JGA4	4-hydroxy-tetrahydrodipicolinate synthase OS=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) OX=504832 GN=dapA PE=3 SV=1
A7HX36	4-hydroxy-tetrahydrodipicolinate synthase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=dapA PE=3 SV=1
Q07607	4-hydroxy-tetrahydrodipicolinate synthase OS=Rhizobium meliloti OX=382 GN=dapA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005376 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00701 all species →	DHDPS	Dihydrodipicolinate synthetase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002220 all species →	Family	DapA-like	Interproscan
IPR005263 all species →	Family	4-hydroxy-tetrahydrodipicolinate synthase, DapA	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12128 all species →	DIHYDRODIPICOLINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0008840 all species →	Molecular Function	4-hydroxy-tetrahydrodipicolinate synthase activity	Interproscan
GO:0009089 all species →	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01714	dapA; 4-hydroxy-tetrahydrodipicolinate synthase	EC:4.3.3.7	Monobactam biosynthesis	ko00261	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.