Gene detail

Detailed information of HSymV2.0_g02.02753_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_2:1537850...1538215
NR annotation: MBQ4874892.1, 50S ribosomal protein L14 [Rickettsiaceae bacterium H1]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3PK47	Large ribosomal subunit protein uL14 OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=rplN PE=3 SV=1
Q0BUP0	Large ribosomal subunit protein uL14 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=rplN PE=3 SV=1
Q2NZZ5	Large ribosomal subunit protein uL14 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) OX=342109 GN=rplN PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00238 all species →	Ribosomal_L14	Ribosomal protein L14p/L23e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000218 all species →	Family	Large ribosomal subunit protein uL14	Interproscan
IPR019972 all species →	Conserved_site	Large ribosomal subunit protein uL14, conserved site	Interproscan
IPR036853 all species →	Homologous_superfamily	Large ribosomal subunit protein uL14 superfamily	Interproscan
IPR005745 all species →	Family	Large ribosomal subunit protein uL14, bacterial-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11761 all species →	50S/60S RIBOSOMAL PROTEIN L14/L23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0070180 all species →	Molecular Function	large ribosomal subunit rRNA binding	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02874	RP-L14, MRPL14, rplN; large subunit ribosomal protein L14	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g02.02753_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

0TPM > 0

3Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Whole embryo	36	0	0.00	0.00
Whole embryo · Triptolide 20 uM	4	0	0.00	0.00
Whole embryo · DMSO 0.5%	4	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.