Gene detail

Detailed information of HSymV2.0_g03.05660_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_3:26161410...26174126
NR annotation: XP_002162791.4, intraflagellar transport protein 81 homolog [Hydra vulgaris]
Species abbreviation HSYMB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HSymV2.0_g03.05660_t1

ATGGGAGAGCAATTAAAATTTATAGTTGATAAACTCAATAAACAACCATTTAATAAAAGTTTGAACTTGATCAGTTTTGATTCTCTACAACCACTTCAACTGCTACAAGTGCTTAATGATGTCATCACTGATATTAATCCACAGCAAGCTTCAGACTTGCGTGAAGAGGATCCAGAGCAACGTGTTGTTCGAATGTTAAACTTCTTAAAAATAATGAAGTACAAGCCGAAAACAGAAGGTGGTAATGTGAGTGCCTTTCGGCAAGGAATTGTACAGGGAGACAAACCAGTAATATATCCAATTCTTCAATGGTTGCTGGAACACTCAGAAGAGTTAAAGAAACGTGCTTATCTTGCTCGCTACTTAGTAAAATTAGATATCCCACAGGACATGGTACTAGATAATGAAGTCAGCGAAACACATGCAATGTATATTGATCTGATAGAGCAGTTTAAAGAACTTCACAAAGAGTCAGGCCAATTGAAAGATTCAGGTCTATCCGCAGCTGAAATAAAAAAGGATATCCTGTCCATGGAGGACGAACAAGAACAGCTAAGAAAGAGAGTTGAAAGAGTCAAAAAACGGGTCGATGCTGTCCCTAATAACGACAAGTTAATTTTTGCTGCAAGACAGCTGCGAAGGGAACGTGAAAAAGAAGCAAATCTTGCTAGTCAGTTACAGACACAAAGAAATCATATTAACCATGCTGAGCAAAAAATCAACCGTATGCAGATCCAGGTGAAAGACCTTCGTGCTGCTGGTATCGGCATTACAGCAGATGGCTTAATCAAGAGGTTGGAGGAAGAGAATCAAGTGAATTCTTTTTTAACCCAAGACAAAATCCCAAAGGAACTTGAAGGCAAGAAAAAGTATTTCGATACACTACAACGTGTTGCTGACGAGCCTGCTATGGGACAGAACGAATTAGACGTATTAAACCGCAAGATCAAGGAGTTGTCTTCTGAAATCAACGAACTGGTAGAAAAGAGAATGGTTCGAAATGATCCTATGGATGACAAGCTCTCTGTGTTTAGACAGCAAGCTGCTGTTATTGCAAACAAGAAAAATTCAGCTGCAGAGGATTTGCAAGAGACTATGGATGAGTTCCATAATGCTGAAAGTGATCTAAAAAGTCGAAAGGATCAACTTCAAGATACTGAGGATGTTCAAATCTTAAAAGGCGACGATTTCAAACGTTATGTTAACAAACTTCGCGGTAAAAGCACAGTTTATAAGAAGAAGAGACAAGAGCTTTCAGAGCTGCAAGCTGAAGTTGGTGTATTGAGTCGAACAAACGAGATCTTGATTGCGCGCGATCAACAAACACAAGCCTTTTTATCGAATTTGGAAAGTAAGCATGGCGTATCCGGATTCCATGCTACCCAAGAAGAATTGGAAAAAGTCTCTGCAATGAAGAGTGAATTGGACGAACAAAAAGGCAAAACACTGGAGGAAATGTCTCAACTGGTTGTCCAATTAACAAACACGATAGCCGAGAAAAAAAGTTCGTTAGCTCCCATAATTAAAGAATTGAGACCTTTAAGACAACAGTGTCAGGAGTTAACTGTTGAGTATGAGGAAAGAAAAGGTATTTACGACACTACAGCTGCTGGGTTAGAAAGTAACATGTCTAAATTAGACCAGGATGTGAAGGCATTACGTGAAGAAGTTCTGCAAGAAAATAGTAGATACCATTACATTCAAGCTATGATTGAGATACTGGAGGTTCAACAGCGACGTATTGAGAACGAAATTAAATTATACGTGTCTACAGATGGTGGAAAGAAATCACTCAGAGATCAATACACGCAAAAAATACATGAACAGGAGAATCAAGGCAAAGCTCTTCGTGAACAACAAAAGTACGTGCGTGAAAGTCATGGACCGAGCATGCGTCAAATGAAGATGTGGAGCGATTTGTCAGCCATTTTAAACTGCAAAAAGGATTTAGTGACGCAAAAAGAAGACGGTGATATGAATGTGCCGGCATACGAGCAAGAAAACTTTTTGGTTCTTTGA

Transcript

HSymV2.0_g03.05660_t1

TTTTAGAGTGatatatatatatatattataAAGATGGGAGAGCAATTAAAATTTATAGTTGATAAACTCAATAAACAACCATTTAATAAAAGTTTGAACTTGATCAGTTTTGATTCTCTACAACCACTTCAACTGCTACAAGTGCTTAATGATGTCATCACTGATATTAATCCACAGCAAGCTTCAGACTTGCGTGAAGAGGATCCAGAGCAACGTGTTGTTCGAATGTTAAACTTCTTAAAAATAATGAAGTACAAGCCGAAAACAGAAGGTGGTAATGTGAGTGCCTTTCGGCAAGGAATTGTACAGGGAGACAAACCAGTAATATATCCAATTCTTCAATGGTTGCTGGAACACTCAGAAGAGTTAAAGAAACGTGCTTATCTTGCTCGCTACTTAGTAAAATTAGATATCCCACAGGACATGGTACTAGATAATGAAGTCAGCGAAACACATGCAATGTATATTGATCTGATAGAGCAGTTTAAAGAACTTCACAAAGAGTCAGGCCAATTGAAAGATTCAGGTCTATCCGCAGCTGAAATAAAAAAGGATATCCTGTCCATGGAGGACGAACAAGAACAGCTAAGAAAGAGAGTTGAAAGAGTCAAAAAACGGGTCGATGCTGTCCCTAATAACGACAAGTTAATTTTTGCTGCAAGACAGCTGCGAAGGGAACGTGAAAAAGAAGCAAATCTTGCTAGTCAGTTACAGACACAAAGAAATCATATTAACCATGCTGAGCAAAAAATCAACCGTATGCAGATCCAGGTGAAAGACCTTCGTGCTGCTGGTATCGGCATTACAGCAGATGGCTTAATCAAGAGGTTGGAGGAAGAGAATCAAGTGAATTCTTTTTTAACCCAAGACAAAATCCCAAAGGAACTTGAAGGCAAGAAAAAGTATTTCGATACACTACAACGTGTTGCTGACGAGCCTGCTATGGGACAGAACGAATTAGACGTATTAAACCGCAAGATCAAGGAGTTGTCTTCTGAAATCAACGAACTGGTAGAAAAGAGAATGGTTCGAAATGATCCTATGGATGACAAGCTCTCTGTGTTTAGACAGCAAGCTGCTGTTATTGCAAACAAGAAAAATTCAGCTGCAGAGGATTTGCAAGAGACTATGGATGAGTTCCATAATGCTGAAAGTGATCTAAAAAGTCGAAAGGATCAACTTCAAGATACTGAGGATGTTCAAATCTTAAAAGGCGACGATTTCAAACGTTATGTTAACAAACTTCGCGGTAAAAGCACAGTTTATAAGAAGAAGAGACAAGAGCTTTCAGAGCTGCAAGCTGAAGTTGGTGTATTGAGTCGAACAAACGAGATCTTGATTGCGCGCGATCAACAAACACAAGCCTTTTTATCGAATTTGGAAAGTAAGCATGGCGTATCCGGATTCCATGCTACCCAAGAAGAATTGGAAAAAGTCTCTGCAATGAAGAGTGAATTGGACGAACAAAAAGGCAAAACACTGGAGGAAATGTCTCAACTGGTTGTCCAATTAACAAACACGATAGCCGAGAAAAAAAGTTCGTTAGCTCCCATAATTAAAGAATTGAGACCTTTAAGACAACAGTGTCAGGAGTTAACTGTTGAGTATGAGGAAAGAAAAGGTATTTACGACACTACAGCTGCTGGGTTAGAAAGTAACATGTCTAAATTAGACCAGGATGTGAAGGCATTACGTGAAGAAGTTCTGCAAGAAAATAGTAGATACCATTACATTCAAGCTATGATTGAGATACTGGAGGTTCAACAGCGACGTATTGAGAACGAAATTAAATTATACGTGTCTACAGATGGTGGAAAGAAATCACTCAGAGATCAATACACGCAAAAAATACATGAACAGGAGAATCAAGGCAAAGCTCTTCGTGAACAACAAAAGTACGTGCGTGAAAGTCATGGACCGAGCATGCGTCAAATGAAGATGTGGAGCGATTTGTCAGCCATTTTAAACTGCAAAAAGGATTTAGTGACGCAAAAAGAAGACGGTGATATGAATGTGCCGGCATACGAGCAAGAAAACTTTTTGGTTCTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P83829	Intraflagellar transport protein 81 homolog OS=Rattus norvegicus OX=10116 GN=Ift81 PE=2 SV=1
O35594	Intraflagellar transport protein 81 homolog OS=Mus musculus OX=10090 GN=Ift81 PE=1 SV=4
Q8WYA0	Intraflagellar transport protein 81 homolog OS=Homo sapiens OX=9606 GN=IFT81 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005597 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18383 all species →	IFT81_CH	Intraflagellar transport 81 calponin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041146 all species →	Domain	IFT81, calponin homology domain	Interproscan
IPR029600 all species →	Family	Intraflagellar transport protein 81	Interproscan
IPR043016 all species →	Homologous_superfamily	IFT81, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15614 all species →	INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19677	IFT81; intraflagellar transport protein 81	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.