Gene detail

Detailed information of HSymV2.0_g03.05853_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_3:28727164...28731690
NR annotation: XP_047130251.1, choline-phosphate cytidylyltransferase B [Hydra vulgaris]
Species Hydractinia symbiolongicarpus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49585	Choline-phosphate cytidylyltransferase A OS=Homo sapiens OX=9606 GN=PCYT1A PE=1 SV=2
P19836	Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus OX=10116 GN=Pcyt1a PE=1 SV=2
P49586	Choline-phosphate cytidylyltransferase A OS=Mus musculus OX=10090 GN=Pcyt1a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01467 all species →	CTP_transf_like	Cytidylyltransferase-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004821 all species →	Domain	Cytidyltransferase-like domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR041723 all species →	Domain	CTP:phosphocholine cytidylyltransferase domain	Interproscan
IPR045049 all species →	Family	Choline-phosphate cytidylyltransferase Pcy1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10739 all species →	CYTIDYLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0004105 all species →	Molecular Function	choline-phosphate cytidylyltransferase activity	Interproscan
GO:0006657 all species →	Biological Process	CDP-choline pathway	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00968	PCYT1; choline-phosphate cytidylyltransferase	EC:2.7.7.15	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of HSymV2.0_g03.05853_t1 across 44 RNA-seq samples of Hydractinia symbiolongicarpus. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

44Samples

44TPM > 0

3Conditions

204.5Max TPM

120.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole embryo	36	36	109.01	161.88
Whole embryo · Triptolide 20 uM	4	4	187.51	204.46
Whole embryo · DMSO 0.5%	4	4	154.58	168.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR24482165	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	161.88
SRR24482161	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	161.56
SRR24482166	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	159.77
SRR24482141	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	157.94
SRR24482162	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	153.91
SRR24482142	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	151.63
SRR24482138	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	149.91
SRR24482145	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	146.90
SRR24482140	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	141.89
SRR24482144	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	141.49
SRR24482133	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	141.13
SRR24482143	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	138.89
SRR24482137	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	138.67
SRR24482134	Whole embryo	Whole embryo	5 hpf	not recorded	SRP436676	138.33
SRR24482153	Whole embryo	Whole embryo	7 hpf	not recorded	SRP436676	137.07
SRR24482139	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	136.61
SRR24482136	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	135.32
SRR24482168	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	133.56
SRR24482163	Whole embryo	Whole embryo	6 hpf	not recorded	SRP436676	131.98
SRR24482177	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	128.45
SRR24482135	Whole embryo	Whole embryo	4 hpf	not recorded	SRP436676	127.58
SRR24482167	Whole embryo	Whole embryo	3 hpf	not recorded	SRP436676	125.83
SRR24482169	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	94.90
SRR24482170	Whole embryo	Whole embryo	2 hpf	not recorded	SRP436676	90.55
SRR24482173	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	63.28
SRR24482171	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	63.20
SRR24482172	Whole embryo	Whole embryo	30 mpf	not recorded	SRP436676	61.12
SRR24482176	Whole embryo	Whole embryo	1 hpf	not recorded	SRP436676	56.99
SRR24482160	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	54.36
SRR24482174	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	54.07
SRR24482175	Whole embryo	Whole embryo	Unfertilized egg	not recorded	SRP436676	51.66
SRR24482159	Whole embryo	Whole embryo	24 hpf	not recorded	SRP436676	50.68
SRR24482157	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	46.36
SRR24482155	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	36.89
SRR24482158	Whole embryo	Whole embryo	48 hpf	not recorded	SRP436676	33.61
SRR24482156	Whole embryo	Whole embryo	72 hpf	not recorded	SRP436676	26.30
SRR24482147	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	204.46
SRR24482146	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	200.55
SRR24482150	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	181.38
SRR24482149	Whole embryo · Triptolide 20 uM	Whole embryo	7 hpf	Triptolide 20 uM	SRP436676	163.67
SRR24482154	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	168.29
SRR24482148	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	158.46
SRR24482151	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	155.69
SRR24482152	Whole embryo · DMSO 0.5%	Whole embryo	7 hpf	DMSO 0.5%	SRP436676	135.87

Source: CnidoSite RNA-seq expression matrices (HSYMB_TPM, StringTie quantification over 44 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.